Family GP001642


Family ID GP001642  add to my list RDF
Family name Ribosomal protein l37a family   suggest a name
Cross-reference(s) PMID:
Localization and dynamic behavior of ribosomal protein L30e.
15864315
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein l37a family
GP001642 (160)
2 GP016870 (160)
3 GP041504 (160)
4 GP070887 (160)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 160
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
17 17
7 8
1 1
4 4
2 2
6 6
5 5
3 3
3 3
2 3
2 2
3 3
2 2
3 12
3 3
2 2
4 4
4 4
2 2
2 2
2 2
5 5
5 8
2 2
4 10
2 2
4 4
3 9
5 5
2 2
5 6
3 3
2 2
7 8
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L37ae
IPR002674
Ribosomal protein L37ae Family 93 (148) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L37ae/L37e
IPR011331
Ribosomal protein L37ae/L37e Domain 93 (148) No
Ribosomal protein, zinc-binding domain
IPR011332
Ribosomal protein, zinc-binding domain Domain 93 (148) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011332 IPR011331 IPR002674


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
160 132 (82%) 131 (82%) [41; 93; 1068] ~104 1583 92


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
160 131 (82%) 0.155687 0.0445152 0.175465



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