Family GP001488


Family ID GP001488  add to my list RDF
Family name Afg1-like atpase family   suggest a name
Cross-reference(s) PMID:
AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP family of ATPases.
1441755
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
1-phosphatidylinositol binding
GO:0005545 (1%) - 1-phosphatidylinositol binding
clathrin binding
GO:0030276 (1%) - clathrin binding
cellular_component
clathrin coat
GO:0030118 (1%) - clathrin coat
biological_process
clathrin coat assembly
GO:0048268 (1%) - clathrin coat assembly
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Afg1-like atpase family (plant-specificity: 11%)
GP001488 (161)
2 GP016644 (161)
3 GP042101 (106) ,
(plant-specificity: 9%)
GP046448 (55)
4 GP071525 (106) , GP076152 (55)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 161
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
10 10
6 11
3 3
7 7
2 2
5 5
4 4
4 4
6 6
2 5
2 4
2 2
3 3
3 10
3 4
4 4
2 2
2 2
2 2
3 4
2 2
5 5
2 7
3 3
2 6
2 2
2 2
2 7
4 4
2 2
3 3
2 2
2 5
3 11
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
ATPase, AFG1-like
IPR005654
ATPase, AFG1-like Family 86 (138) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005654


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
161 117 (73%) 97 (60%) [81; 502; 1191] ~462 2317 292