Family GP001668


Family ID GP001668  add to my list RDF
Family name RING-type ubiquitin ligase family   suggest a name
Synonym(s) E3 ubiquitin-protein ligase BAH1-like
Cross-reference(s) PMID:
Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis.
15644464 PMID:
A mutation in NLA, which encodes a RING-type ubiquitin ligase, disrupts the adaptability of Arabidopsis to nitrogen limitation.
17355433 PMID:
BAH1/NLA, a RING-type ubiquitin E3 ligase, regulates the accumulation of salicylic acid and immune responses to pseudomonas syringae DC3000.
18753285
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
RING-type ubiquitin ligase family (plant-specificity: 70%)
GP001668 (141)
2 GP016907 (139)
3 GP041543 (139)
4 GP070930 (138)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 141
Species Count (w/o splice) Count (w/ splice)
2 2
3 5
2 2
8 8
2 2
4 4
4 4
2 2
3 3
2 7
2 5
2 2
2 2
1 1
2 2
4 4
2 2
2 2
2 2
2 5
2 2
6 6
4 7
2 2
4 6
4 4
4 4
4 8
11 11
2 2
6 6
3 3
3 5
5 7
2 2


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, RING-type
IPR001841
Zinc finger, RING-type Domain 79 (112) No
SPX, N-terminal
IPR004331
SPX, N-terminal Domain 82 (116) No
Zinc finger, RING-type, conserved site
IPR017907
Zinc finger, RING-type, conserved site Conserved_site 66 (93) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001841 IPR017907 IPR004331


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
141 115 (82%) 98 (70%) [60; 322; 812] ~299 1417 266




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