Family GP001834


Family ID GP001834  add to my list RDF
Family name Ferredoxin nitrite/sulphite reductase family   suggest a name
Cross-reference(s) PMID:
Cloning and nucleotide sequence of a leaf ferredoxin-nitrite reductase cDNA of rice.
8541663 PMID:
Nucleotide sequence of a gene for nitrite reductase from Arabidopsis thaliana.
7894060 PMID:
Nitrite reductase gene enrichment improves assimilation of NO(2) in Arabidopsis.
11402201
Family Ontology
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molecular_function
DNA binding
GO:0003677 (1%) - DNA binding
iron ion binding
GO:0005506 (1%) - iron ion binding
sulfite reductase (ferredoxin) activity
GO:0050311 (41%) - sulfite reductase (ferredoxin) activity
cellular_component
chloroplast stroma
GO:0009570 (1%) - chloroplast stroma
chloroplast nucleoid
GO:0042644 (1%) - chloroplast nucleoid
biological_process
regulation of DNA replication
GO:0006275 (1%) - regulation of DNA replication
DNA packaging
GO:0006323 (1%) - DNA packaging
sulfide oxidation, using siroheme sulfite reductase
GO:0019424 (1%) - sulfide oxidation, using siroheme sulfite reductase
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ferredoxin nitrite/sulphite reductase family
GP001834 (158)
2
(plant-specificity: 9%)
GP019954 (80) , GP019341 (78)
3 GP044894 (80) , GP044200 (78)
4 GP074510 (80) , GP073729 (78)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 158
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
23 23
7 13
2 2
10 10
2 2
3 3
4 4
6 6
3 3
4 6
2 2
2 2
2 2
3 8
2 2
2 2
3 3
3 3
2 2
2 2
2 2
4 4
3 9
2 2
4 9
2 2
4 4
2 2
4 4
3 3
2 2
2 2
2 2
4 4
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Uncharacterised conserved protein UCP030820
IPR008318
Uncharacterised conserved protein UCP030820 Family 1 (1) Yes
Sulphite reductase, ferredoxin dependent
IPR011787
Sulphite reductase, ferredoxin dependent Family 41 (64) Yes
Cobalamin (vitamin B12) biosynthesis CobG-like
IPR012798
Cobalamin (vitamin B12) biosynthesis CobG-like Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Nitrite/sulphite reductase iron-sulphur/siroheam-binding site
IPR006066
Nitrite/sulphite reductase iron-sulphur/siroheam-binding site Binding_site 80 (127) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Nitrite/Sulfite reductase ferredoxin-like domain
IPR005117 IPR011787
Nitrite/sulphite reductase 4Fe-4S domain
IPR006067 IPR006066



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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
158 134 (85%) 122 (77%) [30; 603; 986] ~578 1579 342


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
158 122 (77%) 1.49961 1.48262 0.0638741



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