Family GP001646


Family ID GP001646  add to my list RDF
Family name Tryptophan synthase family   suggest a name
Cross-reference(s) PMID:
Identification of the gene encoding the tryptophan synthase beta-subunit from Chlamydomonas reinhardtii.
9625698
Family Ontology
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molecular_function
tryptophan synthase activity
GO:0004834 (72%) - tryptophan synthase activity
biological_process
tryptophan biosynthetic process
GO:0000162 (72%) - tryptophan biosynthetic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Tryptophan synthase family
GP001646 (156)
2 GP017904 (114) , GP021623 (42)
3 GP042583 (114) , GP046722 (42)
4 GP072055 (114) , GP076493 (42)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 156
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
8 8
5 6
2 2
5 5
2 2
2 2
2 2
4 4
4 4
2 5
2 3
2 2
2 2
3 7
2 2
3 3
5 5
7 7
3 3
4 4
3 3
9 9
6 8
3 3
4 6
3 3
5 5
5 6
7 7
4 4
4 4
4 4
4 4
6 6
4 4


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Tryptophan synthase, beta chain-like
IPR006316
Tryptophan synthase, beta chain-like Family 19 (30) Yes
Tryptophan synthase, beta chain
IPR006654
Tryptophan synthase, beta chain Family 51 (80) Yes
Tryptophan synthase beta chain/beta chain-like
IPR023026
Tryptophan synthase beta chain/beta chain-like Family 72 (112) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
IPR001926
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily Domain 92 (143) No
Tryptophan synthase, beta chain, conserved site
IPR006653
Tryptophan synthase, beta chain, conserved site Conserved_site 64 (100) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001926 IPR006654 IPR006653 IPR023026


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
156 142 (91%) 129 (83%) [60; 466; 863] ~423 1568 319


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
156 129 (83%) 1.09335 0.627686 0.65637



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