Family GP001533


Family ID GP001533  add to my list RDF
Family name 60S ribosomal protein L30 family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
60S ribosomal protein L30 family
GP001533 (158)
2 GP016698 (158)
3 GP041327 (158)
4 GP070721 (158)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 158
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
8 8
5 5
1 1
2 2
3 3
7 7
4 4
1 1
3 3
3 6
3 4
2 2
2 2
4 7
3 3
2 2
2 2
3 3
3 3
3 3
2 2
4 4
10 18
2 2
4 16
2 2
6 6
2 4
8 8
1 1
3 3
2 2
2 2
8 11
4 4


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L30e
IPR000231
Ribosomal protein L30e Family 35 (55) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR004038
Ribosomal protein L7Ae/L30e/S12e/Gadd45 Domain 89 (141) No
Ribosomal protein L30e, conserved site
IPR022991
Ribosomal protein L30e, conserved site Conserved_site 81 (128) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004038 IPR022991 IPR000231


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
158 126 (80%) 120 (76%) [26; 113; 311] ~110 597 110


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
158 120 (76%) 0.700083 0.651195 0.182999



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