Family GP002980


Family ID GP002980  add to my list RDF
Family name Late embryogenesis abundant protein, LEA-25/LEA-D113   suggest a name
Synonym(s) Late embryogenesis abundant protein, group 4
Comment Late embryogenesis abundant protein, group 4 (Battaglia et al. 2008)
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Late embryogenesis abundant protein, LEA-25/LEA-D113 (plant-specificity: 100%)
GP002980 (158)
2
(plant-specificity: 100%)
GP020291 (83) ,
Late embryogenesis abundant protein, group 1 (plant-specificity: 100%)
GP022763 (25) ,
(plant-specificity: 100%)
GP025734 (21) ,
(plant-specificity: 100%)
GP024603 (20) ,
(plant-specificity: 100%)
GP111636 (9)
3
(plant-specificity: 100%)
GP046768 (80) ,
(plant-specificity: 100%)
GP048643 (23) ,
(plant-specificity: 100%)
GP051874 (19) ,
(plant-specificity: 100%)
GP050371 (17) ,
(plant-specificity: 100%)
GP122222 (9) , GP128084 (2) , GP061122 (3) , GP128816 (3)
4
(plant-specificity: 100%)
GP077400 (71) ,
(plant-specificity: 100%)
GP082764 (14) ,
(plant-specificity: 100%)
GP134347 (12) ,
(plant-specificity: 100%)
GP134717 (11) ,
(plant-specificity: 100%)
GP135530 (9) ,
(plant-specificity: 100%)
GP093863 (8) ,
(plant-specificity: 100%)
GP081851 (6) ,
(plant-specificity: 100%)
GP080840 (6) ,
(plant-specificity: 100%)
GP086265 (5) , GP144191 (3) , GP094624 (3) , GP145324 (3) , GP089535 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 158
Species Count (w/o splice) Count (w/ splice)
1 1
9 9
2 2
4 4
6 6
2 2
3 3
5 5
8 8
7 7
7 7
3 3
5 5
4 4
5 5
6 6
5 5
3 3
3 3
4 4
5 6
3 3
4 6
2 2
4 4
2 2
11 11
3 3
6 6
5 5
5 5
7 8
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Late embryogenesis abundant protein, LEA-25/LEA-D113
IPR005513
Late embryogenesis abundant protein, LEA-25/LEA-D113 Family 87 (137) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005513


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
158 154 (97%) 150 (95%) [51; 120; 271] ~127 515 56


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
158 150 (95%) 0.944691 0.91736 0.302416



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