Family GP001640


Family ID GP001640  add to my list RDF
Family name RING-box family   suggest a name
Cross-reference(s) PMID:
Arabidopsis CULLIN4 forms an E3 ubiquitin ligase with RBX1 and the CDD complex in mediating light control of development.
16844902 PMID:
The AtRbx1 protein is part of plant SCF complexes, and its down-regulation causes severe growth and developmental defects.
12381738 PMID:
Role of the Arabidopsis RING-H2 protein RBX1 in RUB modification and SCF function.
12215511 PMID:
The RUB/Nedd8 conjugation pathway is required for early development in Arabidopsis.
12682009
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
RING-box family
GP001640 (157)
2
Ring-box 1 family
GP018056 (157)
3 GP042745 (155)
4 GP072224 (106) , GP075237 (49)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 157
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
11 11
4 5
1 1
8 8
1 1
6 6
2 2
1 1
2 2
4 4
4 4
5 5
4 4
4 8
3 3
4 4
3 3
3 3
4 4
4 7
1 1
3 3
4 9
3 3
4 4
3 3
2 2
1 1
6 6
4 4
4 4
3 3
4 4
10 15
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, RING-type
IPR001841
Zinc finger, RING-type Domain 73 (114) No
Zinc finger, RING-H2-type
IPR024766
Zinc finger, RING-H2-type Domain 58 (91) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001841 IPR024766


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
157 138 (88%) 123 (78%) [35; 110; 246] ~104 604 84


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
157 123 (78%) 1.6137 1.84577 0.471796



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