Family GP001791


Family ID GP001791  add to my list RDF
Family name Ribosomal protein L4/L1 family   suggest a name
Cross-reference(s) PMID:
Atomic structures at last: the ribosome in 2000.
11297922
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein L4/L1 family (plant-specificity: 19%)
GP001791 (157)
2 GP018966 (88) ,
(plant-specificity: 9%)
GP020159 (64) ,
(plant-specificity: 100%)
GP027717 (5)
3 GP043883 (88) , GP044881 (64) ,
(plant-specificity: 100%)
GP054479 (5)
4 GP073385 (88) , GP074496 (64) ,
(plant-specificity: 100%)
GP086129 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 157
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
16 16
4 4
7 7
4 4
2 2
3 3
2 2
3 3
4 4
3 3
2 2
2 2
3 3
2 2
5 5
3 3
2 2
3 3
2 2
2 5
2 2
6 6
3 18
2 2
3 9
2 2
2 2
2 4
11 11
2 2
2 2
2 2
3 3
6 8
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L4/L1e
IPR002136
Ribosomal protein L4/L1e Family 89 (139) No
Ribosomal protein L4/L1e, bacterial-type
IPR013005
Ribosomal protein L4/L1e, bacterial-type Family 71 (111) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L4 domain
IPR023574
Ribosomal protein L4 domain Domain 89 (140) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013005 IPR002136 IPR023574


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
157 129 (82%) 110 (70%) [64; 289; 777] ~263 1437 162




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