Family GP002183


Family ID GP002183  add to my list RDF
Family name Brca1-associated 2 family   suggest a name
Cross-reference(s) PMID:
Identification of a novel cytoplasmic protein that specifically binds to nuclear localization signal motifs.
9497340
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Brca1-associated 2 family
GP002183 (152)
2
BRCA1-associated 2 family
GP017735 (107) ,
(plant-specificity: 58%)
GP022382 (45)
3 GP042414 (107) ,
(plant-specificity: 58%)
GP047598 (45)
4 GP132294 (105) ,
(plant-specificity: 46%)
GP077471 (43)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 152
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
3 3
2 2
3 3
7 7
3 3
3 3
3 3
3 3
2 2
3 5
3 3
2 2
4 4
4 8
3 3
3 3
3 3
3 3
4 4
3 4
3 3
10 10
3 7
2 2
4 11
3 3
5 5
2 2
9 9
4 4
4 6
2 2
3 3
6 8
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, UBP-type
IPR001607
Zinc finger, UBP-type Domain 80 (121) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001607
BRCA1-associated 2
IPR011422



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
152 130 (86%) 78 (51%) [32; 414; 1063] ~347 2509 348