Family GP001647


Family ID GP001647  add to my list RDF
Family name Primosome PriB single-strand DNA-binding family   suggest a name
Synonym(s) Organellar single stranted DNA binding
Cross-reference(s) PMID:
The single-stranded DNA-binding protein of Escherichia coli.
2087220
Comment Present IPR011344 Single-strand DNA-binding domain
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Primosome PriB single-strand DNA-binding family (plant-specificity: 80%)
GP001647 (156)
2 GP017077 (144) , GP112008 (7) , GP026587 (3)
3 GP043061 (88) ,
(plant-specificity: 100%)
GP047340 (52) , GP122746 (7) , GP053019 (3)
4 GP074720 (82) ,
(plant-specificity: 100%)
GP077184 (52) , GP136870 (7) ,
(plant-specificity: 100%)
GP089173 (5) , GP090842 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 156
Species Count (w/o splice) Count (w/ splice)
3 3
7 7
1 1
6 6
3 3
4 4
5 5
3 3
4 4
3 7
3 3
4 4
3 3
4 7
3 3
2 2
3 3
3 3
4 4
4 6
2 2
10 10
3 5
4 4
5 8
5 5
5 5
2 2
7 7
2 2
3 3
3 3
3 4
8 12
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Primosome PriB/single-strand DNA-binding
IPR000424
Primosome PriB/single-strand DNA-binding Family 74 (115) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Nucleic acid-binding, OB-fold
IPR012340
Nucleic acid-binding, OB-fold Domain 73 (114) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012340 IPR000424


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
156 136 (87%) 129 (83%) [77; 290; 778] ~290 1935 129


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
156 129 (83%) 1.03139 1.12082 0.462325



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