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Family GP001987


Family ID GP001987  add to my list RDF
Family name Histone acetyltransferase family   suggest a name
Cross-reference(s) PMID:
Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.
12466527
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Histone acetyltransferase family
GP001987 (158)
2 GP017379 (106) ,
(plant-specificity: 19%)
GP109311 (52)
3 GP042043 (106) ,
(plant-specificity: 19%)
GP119101 (52)
4 GP071948 (105) ,
(plant-specificity: 19%)
GP080518 (51)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 158
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
28 28
4 5
2 2
11 11
3 3
4 4
2 2
9 9
4 4
2 2
3 3
3 3
2 2
4 7
2 2
2 2
2 2
2 2
2 2
3 4
3 3
2 2
6 11
2 2
3 4
2 2
4 4
2 2
5 5
6 6
2 2
2 2
3 3
4 4
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Acyl-CoA N-acyltransferase
IPR016181


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
158 147 (93%) 105 (66%) [66; 414; 2062] ~365 2692 92