Family GP001987
Family ID | GP001987 add to my list RDF |
---|---|
Family name | Histone acetyltransferase family suggest a name |
Cross-reference(s) |
PMID:
Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.
12466527
|
Curation status ? |
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Found in | No specificity |
Phylogenetic analyzes |
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Clustering level | Family ID (number of sequences) |
---|---|
1 |
Histone acetyltransferase family
GP001987
(158)
|
2 |
GP017379
(106)
,
(plant-specificity: 19%)
GP109311
(52)
|
3 |
GP042043
(106)
,
(plant-specificity: 19%)
GP119101
(52)
|
4 |
GP071948
(105)
,
(plant-specificity: 19%)
GP080518
(51)
|
Table 1:
This table displays which relationship has the selected family with other
families in GreenPhyl clustering
?.
Legend:
-
Families (clustering)
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Selected family is highlighted like this.
- Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
- Gene families are coloured in this color when the phylogenetic analyses are available.
(click on chart bars above to get species proteins)

No IPR family

No other significant IPR (i.e. > 25%)


(click on the button above to get your protein list)
Alignment not available.
[Masking step 1 details]
[Masking step 2 details]
[Filtration details]
[Global HMM file]
Phylogeny tree not available.
Alignment and filtration statistics:
Overall family sequences | Sequences used for alignment (w/o splice) | Sequences kept after filtration | [min; median; max] ~average sequence length | Alignment length | Masked alignment length |
---|---|---|---|---|---|
158 | 147 (93%) | 105 (66%) | [66; 414; 2062] ~365 | 2692 | 92 |