Family GP000117


Family ID GP000117  add to my list RDF
Family name Heat stress transcription factor family   suggest a name
Synonym(s) HSF
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Heat stress transcription factor family
GP000117 (1111)
2 GP015116 (1097) ,
(plant-specificity: 100%)
GP027113 (5) , GP118267 (3)
3 GP039890 (1097) ,
(plant-specificity: 100%)
GP052430 (5) , GP131610 (3)
4 GP069403 (1097) ,
(plant-specificity: 100%)
GP085006 (5) , GP148917 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1111
Species Count (w/o splice) Count (w/ splice)
3 3
2 2
14 14
8 10
7 7
25 25
16 16
45 45
43 43
30 30
22 22
27 44
27 33
28 28
27 27
29 57
24 26
25 25
31 31
28 28
22 22
25 28
19 19
42 42
42 63
19 19
31 52
19 19
36 36
22 23
55 55
24 24
45 45
20 20
31 36
54 64
28 28


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Caulimovirus DNA-binding protein
IPR004986
Caulimovirus DNA-binding protein Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Heat shock factor (HSF)-type, DNA-binding
IPR000232
Heat shock factor (HSF)-type, DNA-binding Domain 86 (950) No
Winged helix-turn-helix DNA-binding domain
IPR011991
Winged helix-turn-helix DNA-binding domain Domain 89 (992) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011991 IPR000232


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Species
Information to display
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