Family GP000137


Family ID GP000137  add to my list RDF
Family name Endoglucanase family   suggest a name
Synonym(s) Glycosyl hydrolase family 9
Cross-reference(s) PMID:
A rice family 9 glycoside hydrolase isozyme with broad substrate specificity for hemicelluloses in type II cell walls.
17056618 PMID:
Phylogenetic analysis of the plant endo-beta-1,4-glucanase gene family.
15170254
Family Ontology
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molecular_function
carbohydrate binding
GO:0030246 (9%) - carbohydrate binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Endoglucanase family
GP000137 (1079)
2 GP015185 (1056) ,
(plant-specificity: 100%)
GP022521 (21) , GP114505 (4)
3 GP039886 (1056) ,
(plant-specificity: 100%)
GP047911 (21) , GP126419 (4)
4 GP069400 (1056) , GP078058 (21)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1079
Species Count (w/o splice) Count (w/ splice)
4 4
20 20
14 14
56 56
42 42
36 36
31 31
45 45
32 32
26 29
24 24
23 23
25 25
32 40
23 23
28 28
25 25
28 28
21 21
26 27
20 20
33 33
26 52
19 19
32 53
20 20
26 26
19 20
48 48
32 32
62 64
23 23
23 24
42 47
25 25


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycoside hydrolase, family 9
IPR001701
Glycoside hydrolase, family 9 Family 92 (993) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Six-hairpin glycosidase-like
IPR008928
Six-hairpin glycosidase-like Domain 92 (996) No
Six-hairpin glycosidase
IPR012341
Six-hairpin glycosidase Domain 93 (999) No
Glycoside hydrolase, family 9, active site
IPR018221
Glycoside hydrolase, family 9, active site Active_site 65 (696) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008928 IPR012341 IPR001701 IPR018221


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Species
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