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Family GP002217


Family ID GP002217  add to my list RDF
Family name Histidine phosphatase superfamily, clade-2 family   suggest a name
Cross-reference(s) PMID:
The histidine phosphatase superfamily: structure and function.
18092946
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Histidine phosphatase superfamily, clade-2 family (plant-specificity: 11%)
GP002217 (150)
2 GP017805 (150)
3 GP042483 (150)
4 GP071927 (150)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 150
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
2 2
2 2
1 1
5 5
1 1
7 7
7 7
3 3
4 4
3 4
2 2
3 3
3 3
2 3
2 2
1 1
6 6
4 4
1 1
2 4
2 2
8 8
2 8
2 2
2 10
1 1
3 3
2 3
4 4
6 6
6 6
4 4
2 4
5 18
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Histidine phosphatase superfamily, clade-2
IPR000560
Histidine phosphatase superfamily, clade-2 Family 81 (122) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000560


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
150 116 (77%) 60 (40%) [45; 775; 2484] ~682 3308 986