Family GP020674


Family ID GP020674  add to my list RDF
Family name Unannotated cluster   suggest a name
Family Ontology
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biological_process
recognition of pollen
GO:0048544 (2%) - recognition of pollen
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Ammonium transporter subfamily (plant-specificity: 19%)
GP000388 (601)
2
(plant-specificity: 25%)
GP020674 (52)
3
(plant-specificity: 25%)
GP045685 (52)
4
(plant-specificity: 25%)
GP132502 (52)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 52
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
1 1
2 2
1 1
1 2
1 1
1 1
1 1
1 5
1 1
1 1
1 1
1 1
1 1
1 1
1 1
4 4
1 2
2 2
2 2
1 1
1 1
1 1
3 3
1 1
3 4
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Exosome complex component CSL4
IPR019495
Exosome complex component CSL4 Family 90 (47) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Exosome complex component, N-terminal domain
IPR025721
Exosome complex component, N-terminal domain Domain 79 (41) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Ribosomal protein L27
IPR001684 IPR025721 IPR019495



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Species
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