Family GP004209


Family ID GP004209  add to my list RDF
Family name Ribosomal family L35   suggest a name
Cross-reference(s) PMID:
Atomic structures at last: the ribosome in 2000.
11297922
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal family L35 (plant-specificity: 9%)
GP004209 (145)
2 GP020302 (55) , GP021370 (46) ,
(plant-specificity: 19%)
GP021820 (44)
3 GP045282 (55) , GP046442 (46) ,
(plant-specificity: 19%)
GP046947 (44)
4 GP074902 (55) , GP076146 (46) ,
(plant-specificity: 19%)
GP076750 (44)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 145
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
1 1
4 4
3 3
5 5
3 3
6 6
1 1
3 3
3 3
3 4
3 3
3 3
3 3
6 10
3 3
3 3
3 3
3 3
4 4
3 4
3 3
6 6
4 11
3 3
5 7
3 3
5 5
3 3
2 2
4 4
4 4
2 2
3 3
6 10
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
145 126 (87%) 120 (83%) [53; 179; 717] ~207 1058 64


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
145 120 (83%) 4.22084 4.54913 0.9064



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