Family GP021455


Family ID GP021455  add to my list RDF
Family name DNA-directed RNA polymerase III subunit C11 family   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Transcription elongation factor, iis type family (plant-specificity: 30%)
GP001091 (362)
2
DNA-directed RNA polymerase III subunit C11 family (plant-specificity: 11%)
GP021455 (51)
3 GP046542 (44) , GP122751 (7)
4 GP076269 (44) , GP136882 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 51
Species Count (w/o splice) Count (w/ splice)
1 1
7 7
1 1
2 2
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
3 3
1 1
1 1
1 1
2 2
1 1
1 1
2 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
1 1
1 1
2 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Transcription factor S/DNA-directed RNA polymerase subunit M
IPR006288
Transcription factor S/DNA-directed RNA polymerase subunit M Family 8 (4) Yes
DNA-directed RNA polymerase, subunit C11/M/9
IPR012164
DNA-directed RNA polymerase, subunit C11/M/9 Family 75 (38) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, TFIIS-type
IPR001222
Zinc finger, TFIIS-type Domain 78 (40) No
DNA-directed RNA polymerase, M/15kDa subunit
IPR001529
DNA-directed RNA polymerase, M/15kDa subunit Domain 80 (41) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
WW domain
IPR001202 IPR001222 IPR012164 IPR001529



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Species
Information to display
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