Family GP000234


Family ID GP000234  add to my list RDF
Family name Oxygen-dependent FAD-linked oxidoreductase family   suggest a name
Synonym(s) Reticuline oxidase precursor
Family Ontology
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molecular_function
UDP-N-acetylmuramate dehydrogenase activity
GO:0008762 (22%) - UDP-N-acetylmuramate dehydrogenase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Oxygen-dependent FAD-linked oxidoreductase family (plant-specificity: 9%)
GP000234 (1049)
2
FAD-binding and Berberine/berberine-like domain containing protein family
GP015186 (831) , GP016743 (152) ,
(plant-specificity: 100%)
GP109455 (39) , GP021530 (27)
3 GP039885 (831) , GP041376 (152) ,
(plant-specificity: 100%)
GP119223 (39) , GP046618 (27)
4 GP069399 (831) , GP070829 (152) , GP076400 (39) , GP076357 (27)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1049
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
6 6
27 27
29 29
11 11
17 17
15 15
13 13
14 14
27 27
17 17
25 25
21 21
24 29
20 22
51 51
33 33
41 41
23 23
35 37
24 27
38 38
49 49
48 48
80 82
24 24
24 24
27 27
17 17
30 30
50 50
20 20
44 44
72 72
35 35


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
FAD linked oxidase, N-terminal
IPR006094
FAD linked oxidase, N-terminal Domain 67 (701) No
Berberine/berberine-like
IPR012951
Berberine/berberine-like Domain 67 (706) No
FAD-binding, type 2
IPR016166
FAD-binding, type 2 Domain 70 (738) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006094 IPR016166 IPR012951


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Species
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