Family GP001940


Family ID GP001940  add to my list RDF
Family name Pyridoxal phosphate-dependent deaminase family   suggest a name
Cross-reference(s) PMID:
Pyridoxal enzymes: mechanistic diversity and uniformity.
8690703 PMID:
Pyridoxal phosphate-dependent enzymes.
7748903
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Pyridoxal phosphate-dependent deaminase family
GP001940 (143)
2 GP019314 (86) , GP109253 (57)
3 GP044159 (69) , GP119035 (57) , GP120034 (17)
4 GP073692 (69) , GP075499 (57) , GP133485 (17)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 143
Species Count (w/o splice) Count (w/ splice)
4 4
17 17
2 2
8 8
4 4
2 2
2 2
2 2
2 2
3 3
2 5
3 3
2 2
2 2
3 8
3 3
2 2
2 2
2 2
3 3
2 3
2 2
11 11
2 13
2 2
3 9
2 2
2 2
2 2
4 4
3 3
2 2
2 2
2 2
3 4
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
D-cysteine desulfhydrase
IPR005966
D-cysteine desulfhydrase Family 37 (53) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
IPR001926
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily Domain 89 (127) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001926 IPR005966


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
143 116 (81%) 101 (71%) [64; 358; 565] ~338 1017 180




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