Family GP001641


Family ID GP001641  add to my list RDF
Family name Ribosomal protein l22 family   suggest a name
Synonym(s) Ribosomal protein l22e
Cross-reference(s) PMID:
The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.
11598216
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein l22 family
GP001641 (142)
2 GP016868 (142)
3 GP041502 (142)
4 GP070886 (142)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 142
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
7 7
8 8
1 1
1 1
1 1
6 6
4 4
4 4
2 2
2 2
2 2
2 2
2 2
5 7
2 2
2 2
3 3
3 3
4 4
3 5
2 2
2 2
4 9
3 3
5 9
3 3
4 4
3 5
5 5
3 3
4 4
3 3
3 4
9 13
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L22e
IPR002671
Ribosomal protein L22e Family 92 (131) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002671


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
142 122 (86%) 118 (83%) [47; 125; 239] ~123 423 122


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
142 118 (83%) 0.493726 0.346647 0.265622



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