Family GP000017


Family ID GP000017  add to my list RDF
Family name AP2/EREBP transcription factor family: ERF/DREB group (partial)   suggest a name
Cross-reference(s) PMID:
Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
20049613 PMID:
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
12609047 PMID:
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis.
9707537 PMID:
Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression.
10809011 PMID:
Arabidopsis ethylene responsive element binding factors act as transcriptional activators or repressors of GCC box mediated gene expression.
10715325 PMID:
Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant.
9756931 PMID:
A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.
9736626 PMID:
The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
9192694 PMID:
The APETALA2 domain is related to a novel type of DNA binding domain.
7773013 PMID:
From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants.
15319480 PMID:
AP2/ERF family transcription factors in plant abiotic stress responses.
21867785 PMID:
Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice.
21169347 PMID:
Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
18442469 PMID:
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera.
21171999
Comment For an ‘almost’ complete set of ERF/DREB sequences: join family ID 17 and 15104
Family Ontology
Close Hide
N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
AP2/EREBP transcription factor family: ERF/DREB group (partial) (plant-specificity: 98%)
GP000017 (5142)
2
ERF subfamily
GP015092 (5001) ,
(plant-specificity: 100%)
GP110548 (15) ,
(plant-specificity: 100%)
GP111132 (10) ,
(plant-specificity: 100%)
GP111843 (8) ,
(plant-specificity: 100%)
GP025763 (6) ,
(plant-specificity: 85%)
GP025389 (7) ,
(plant-specificity: 100%)
GP112676 (6) ,
(plant-specificity: 100%)
GP112926 (6) ,
(plant-specificity: 100%)
GP036085 (8) ,
(plant-specificity: 100%)
GP113248 (7) ,
(plant-specificity: 100%)
GP113760 (5) ,
(plant-specificity: 100%)
GP114227 (5) , GP114410 (4) , GP114592 (3) , GP115166 (4) , GP115170 (4) , GP115171 (4) ,
(plant-specificity: 100%)
GP116030 (5) , GP116208 (3) , GP116319 (3) , GP116371 (3) , GP116538 (3) , GP116636 (3) , GP116814 (3) , GP117794 (3) , GP118144 (3) , GP118161 (3)
3 GP039824 (2578) ,
DREB group III (partial)
GP040025 (1827) , GP040649 (238) ,
(plant-specificity: 100%)
GP118826 (113) ,
(plant-specificity: 100%)
GP119175 (69) ,
(plant-specificity: 100%)
GP119566 (23) ,
(plant-specificity: 100%)
GP119796 (25) ,
(plant-specificity: 100%)
GP119799 (20) ,
(plant-specificity: 100%)
GP120288 (15) ,
(plant-specificity: 100%)
GP120614 (15) ,
(plant-specificity: 100%)
GP121737 (6) ,
(plant-specificity: 100%)
GP121817 (10) ,
(plant-specificity: 100%)
GP121982 (9) ,
(plant-specificity: 100%)
GP122523 (8) ,
(plant-specificity: 100%)
GP122729 (7) ,
(plant-specificity: 100%)
GP122811 (9) ,
(plant-specificity: 100%)
GP050744 (10) ,
(plant-specificity: 98%)
GP122918 (9) ,
(plant-specificity: 100%)
GP122943 (8) ,
(plant-specificity: 100%)
GP065033 (8) ,
(plant-specificity: 100%)
GP058095 (6) ,
(plant-specificity: 85%)
GP051446 (7) ,
(plant-specificity: 100%)
GP123692 (9) ,
(plant-specificity: 100%)
GP123788 (6) ,
(plant-specificity: 100%)
GP124508 (6) ,
(plant-specificity: 100%)
GP053018 (6) ,
(plant-specificity: 100%)
GP124668 (6) ,
(plant-specificity: 100%)
GP124762 (6) ,
(plant-specificity: 100%)
GP125399 (5) , GP125823 (4) ,
(plant-specificity: 100%)
GP125994 (5) ,
(plant-specificity: 100%)
GP126063 (5) , GP126268 (4) , GP126537 (3) , GP127330 (4) , GP127331 (4) , GP128608 (3) , GP128636 (3) , GP063886 (3) , GP129093 (3) , GP129156 (3) , GP129180 (3) , GP052672 (3) , GP129418 (3) , GP129434 (3) , GP129587 (3) , GP129849 (3) , GP131455 (3) , GP131478 (3)
4
ERF group VIII (partial)
GP069647 (1683) ,
DREB group 1
GP069590 (1022) , GP069648 (389) , GP069786 (254) , GP071059 (238) , GP070246 (222) , GP071528 (160) , GP070118 (143) , GP070789 (113) ,
(plant-specificity: 100%)
GP132364 (76) ,
(plant-specificity: 99%)
GP100325 (76) , GP074418 (69) ,
(plant-specificity: 100%)
GP132416 (64) ,
(plant-specificity: 100%)
GP077694 (56) ,
(plant-specificity: 100%)
GP132681 (35) ,
(plant-specificity: 100%)
GP132912 (25) ,
(plant-specificity: 100%)
GP091885 (24) ,
(plant-specificity: 100%)
GP133193 (20) ,
(plant-specificity: 100%)
GP133451 (17) ,
(plant-specificity: 100%)
GP133617 (16) ,
(plant-specificity: 100%)
GP133741 (15) ,
(plant-specificity: 100%)
GP133761 (15) ,
(plant-specificity: 100%)
GP133762 (15) ,
(plant-specificity: 98%)
GP133885 (14) ,
(plant-specificity: 100%)
GP134603 (11) ,
(plant-specificity: 100%)
GP081334 (10) ,
(plant-specificity: 100%)
GP135425 (9) ,
(plant-specificity: 100%)
GP135506 (9) ,
(plant-specificity: 100%)
GP135512 (9) ,
(plant-specificity: 98%)
GP135586 (9) ,
(plant-specificity: 100%)
GP135955 (8) ,
(plant-specificity: 100%)
GP136029 (8) ,
(plant-specificity: 100%)
GP136033 (8) ,
(plant-specificity: 100%)
GP099351 (8) ,
(plant-specificity: 100%)
GP136044 (8) ,
(plant-specificity: 100%)
GP136295 (8) ,
(plant-specificity: 100%)
GP136315 (8) ,
(plant-specificity: 100%)
GP081027 (8) ,
(plant-specificity: 100%)
GP136840 (7) ,
(plant-specificity: 100%)
GP136921 (7) ,
(plant-specificity: 100%)
GP084264 (7) ,
(plant-specificity: 85%)
GP082247 (7) ,
(plant-specificity: 100%)
GP083821 (6) ,
(plant-specificity: 100%)
GP137886 (6) ,
(plant-specificity: 100%)
GP137889 (6) ,
(plant-specificity: 100%)
GP137927 (6) ,
(plant-specificity: 100%)
GP137928 (6) ,
(plant-specificity: 100%)
GP086020 (6) ,
(plant-specificity: 100%)
GP138134 (6) ,
(plant-specificity: 100%)
GP138207 (6) ,
(plant-specificity: 100%)
GP138668 (6) ,
(plant-specificity: 100%)
GP138669 (6) ,
DREB group 2 (plant-specificity: 100%)
GP088530 (5) ,
(plant-specificity: 100%)
GP139057 (5) ,
(plant-specificity: 100%)
GP139152 (5) ,
(plant-specificity: 100%)
GP139361 (5) ,
(plant-specificity: 100%)
GP139383 (5) ,
(plant-specificity: 100%)
GP139389 (5) ,
(plant-specificity: 100%)
GP140463 (5) , GP140948 (4) , GP141003 (4) , GP141357 (4) , GP141760 (4) , GP095056 (4) , GP090760 (4) , GP143119 (4) , GP143120 (4) , GP143140 (4) , GP144716 (3) , GP144847 (3) , GP144904 (3) , GP144976 (3) , GP145032 (3) , GP089831 (3) , GP145743 (3) , GP145842 (3) , GP145871 (3) , GP083684 (3) , GP146185 (3) , GP146229 (3) , GP146250 (3) , GP146473 (3) , GP146820 (3) , GP148285 (3) , GP148717 (3) , GP148747 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 5142
Species Count (w/o splice) Count (w/ splice)
8 8
5 5
133 145
41 41
291 291
62 62
209 209
228 228
142 142
61 61
135 159
117 123
101 101
151 151
190 220
130 133
82 82
196 196
149 149
83 83
121 135
76 76
111 111
223 245
96 96
173 204
93 93
164 164
117 126
208 208
139 139
189 189
124 124
149 153
303 330
160 160


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Pathogenesis-related genes transcriptional activator PTI6
IPR017392
Pathogenesis-related genes transcriptional activator PTI6 Family 1 (6) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
AP2/ERF domain
IPR001471
AP2/ERF domain Domain 92 (4748) No
DNA-binding domain
IPR016177
DNA-binding domain Domain 91 (4674) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001471 IPR016177


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Species
Information to display
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