Family GP001604


Family ID GP001604  add to my list RDF
Family name ULT transcription factor family   suggest a name
Synonym(s) ULTRAPETALA
Cross-reference(s) PMID:
ULTRAPETALA1 encodes a SAND domain putative transcriptional regulator that controls shoot and floral meristem activity in Arabidopsis.
15673576 PMID:
The ULTRAPETALA1 gene functions early in Arabidopsis development to restrict shoot apical meristem activity and acts through WUSCHEL to regulate floral meristem determinacy.
15342527
Curation status ?
Found in Spermatophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
ULT transcription factor family (plant-specificity: 98%)
GP001604 (134)
2 GP016974 (114) ,
(plant-specificity: 100%)
GP111652 (10) ,
(plant-specificity: 100%)
GP112738 (6) , GP116154 (2)
3 GP041617 (114) ,
(plant-specificity: 100%)
GP123881 (6) ,
(plant-specificity: 100%)
GP123887 (5) ,
(plant-specificity: 100%)
GP128750 (5) , GP128815 (2)
4 GP071395 (114) ,
(plant-specificity: 100%)
GP138404 (6) ,
(plant-specificity: 100%)
GP138997 (5) ,
(plant-specificity: 100%)
GP139996 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 134
Species Count (w/o splice) Count (w/ splice)
3 3
1 1
3 3
3 3
4 4
3 3
2 2
2 2
1 1
1 1
2 6
1 1
3 3
2 2
3 3
1 1
2 3
29 29
3 3
3 8
2 2
3 4
3 3
3 3
2 3
8 8
6 6
4 4
1 1
1 1
15 15
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Developmental regulator, ULTRAPETALA
IPR020533
Developmental regulator, ULTRAPETALA Family 9 (12) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
134 122 (91%) 79 (59%) [18; 218; 910] ~183 1794 188