Family GP025797


Family ID GP025797  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Magnoliophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
MADS transcription factor family (plant-specificity: 60%)
GP000028 (4022)
2
(plant-specificity: 97%)
GP025797 (33)
3
(plant-specificity: 100%)
GP119716 (21) ,
(plant-specificity: 85%)
GP120247 (15) , GP125813 (4) ,
(plant-specificity: 100%)
GP051980 (5) , GP126398 (4)
4
(plant-specificity: 63%)
GP082827 (40) ,
(plant-specificity: 100%)
GP082861 (20) ,
(plant-specificity: 100%)
GP082944 (5) , GP140983 (4) , GP141956 (4) , GP143987 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 33
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
2 2
12 12
3 3
1 1
1 1
5 5
3 3
1 1
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor, MADS-box
IPR002100
Transcription factor, MADS-box Domain 88 (29) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002100


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Species
Information to display
?


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