Family GP000485


Family ID GP000485  add to my list RDF
Family name Glycoside hydrolase family 3   suggest a name
Synonym(s) Beta-D-xylosidase, beta-glucosidase
Cross-reference(s) PMID:
Purification and characterization of enzymes exhibiting beta-D-xylosidase activities in stem tissues of Arabidopsis.
15181203 PMID:
Glycosyl hydrolases of cell wall are induced by sugar starvation in Arabidopsis.
17234672 PMID:
AtBXL1, a novel higher plant (Arabidopsis thaliana) putative beta-xylosidase gene, is involved in secondary cell wall metabolism and plant development.
12609041 PMID:
AtBXL1 encodes a bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase required for pectic arabinan modification in arabidopsis mucilage secretory cells.
19458117 PMID:
Three-dimensional structure of a barley beta-D-glucan exohydrolase, a family 3 glycosyl hydrolase.
10368285 PMID:
Structural rationale for low-nanomolar binding of transition state mimics to a family GH3 beta-D-glucan glucohydrolase from barley.
16342944 PMID:
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
7624375 PMID:
Structures and mechanisms of glycosyl hydrolases.
8535779
Family Ontology
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molecular_function
binding
GO:0005488 (10%) - binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Glycoside hydrolase family 3
GP000485 (1146)
2
Glycosyl hydrolase family 3 subfamily 2
GP015380 (515) ,
Glycosyl hydrolase family 3 subfamily 1
GP015495 (631)
3 GP040049 (515) , GP040159 (627) , GP127155 (4)
4 GP069640 (627) , GP069539 (515) , GP094122 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1146
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
16 18
11 11
81 81
28 28
32 32
33 33
34 34
30 30
21 38
18 19
22 22
29 29
23 53
19 27
32 32
26 26
22 22
32 32
21 27
28 28
39 39
31 68
26 26
30 52
31 31
24 24
17 24
64 64
36 36
43 43
18 18
19 20
38 48
28 28


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glycoside hydrolase, family 3, N-terminal
IPR001764
Glycoside hydrolase, family 3, N-terminal Domain 73 (835) No
Glycoside hydrolase family 3 C-terminal domain
IPR002772
Glycoside hydrolase family 3 C-terminal domain Domain 67 (769) No
Glycoside hydrolase, superfamily
IPR017853
Glycoside hydrolase, superfamily Domain 72 (826) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR017853 IPR001764 IPR002772


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Species
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