Family GP000020


Family ID GP000020  add to my list RDF
Family name NAC transcription factor family   suggest a name
Cross-reference(s) PMID:
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
15029955 PMID:
NAC transcription factors in plant abiotic stress responses.
22037288 PMID:
Phylogenetic analyses unravel the evolutionary history of NAC proteins in plants.
22671550 PMID:
NAC proteins: regulation and role in stress tolerance.
22445067 PMID:
Comprehensive analysis of NAC domain transcription factor gene family in Populus trichocarpa.
20630103
Comment
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
NAC transcription factor family (plant-specificity: 91%)
GP000020 (4574)
2 GP015130 (3742) , GP015678 (348) ,
(plant-specificity: 42%)
GP021696 (47) ,
(plant-specificity: 100%)
GP021861 (41) ,
(plant-specificity: 100%)
GP021731 (44) ,
(plant-specificity: 100%)
GP024055 (35) ,
(plant-specificity: 100%)
GP109771 (24) ,
(plant-specificity: 100%)
GP023611 (20) ,
(plant-specificity: 100%)
GP110440 (16) ,
(plant-specificity: 100%)
GP110553 (15) ,
(plant-specificity: 100%)
GP025011 (9) ,
(plant-specificity: 100%)
GP110908 (13) ,
(plant-specificity: 100%)
GP026260 (11) ,
(plant-specificity: 100%)
GP111106 (13) ,
(plant-specificity: 100%)
GP111625 (8) ,
(plant-specificity: 100%)
GP027913 (8) ,
(plant-specificity: 100%)
GP111685 (7) ,
(plant-specificity: 100%)
GP111705 (9) ,
(plant-specificity: 100%)
GP027831 (11) ,
(plant-specificity: 100%)
GP027911 (7) ,
(plant-specificity: 100%)
GP112112 (7) ,
(plant-specificity: 100%)
GP112122 (7) ,
(plant-specificity: 100%)
GP112131 (7) ,
(plant-specificity: 100%)
GP112152 (7) ,
(plant-specificity: 100%)
GP025718 (6) ,
(plant-specificity: 100%)
GP112570 (7) ,
(plant-specificity: 100%)
GP112599 (7) ,
(plant-specificity: 100%)
GP034316 (7) ,
(plant-specificity: 100%)
GP112612 (8) , GP113074 (6) , GP113107 (4) ,
(plant-specificity: 100%)
GP113307 (5) ,
(plant-specificity: 100%)
GP026129 (6) , GP113354 (2) , GP113513 (5) , GP028267 (4) , GP114380 (2) , GP114397 (4) , GP114406 (4) , GP030674 (4) , GP115599 (3) , GP115684 (3) , GP115843 (3) ,
(plant-specificity: 100%)
GP027759 (5) , GP116205 (2) , GP116384 (3) , GP116786 (3) , GP117784 (3) , GP118231 (3)
3 GP039843 (3658) , GP040348 (348) ,
(plant-specificity: 42%)
GP046797 (47) ,
(plant-specificity: 100%)
GP046787 (41) ,
(plant-specificity: 100%)
GP054548 (27) ,
(plant-specificity: 100%)
GP049667 (29) ,
(plant-specificity: 100%)
GP119589 (24) ,
(plant-specificity: 100%)
GP120181 (16) ,
(plant-specificity: 100%)
GP120419 (13) ,
(plant-specificity: 100%)
GP120442 (21) ,
(plant-specificity: 100%)
GP120814 (13) ,
(plant-specificity: 100%)
GP120839 (13) ,
(plant-specificity: 100%)
GP120848 (12) ,
(plant-specificity: 100%)
GP061298 (12) ,
(plant-specificity: 100%)
GP121070 (15) ,
(plant-specificity: 100%)
GP050922 (9) ,
(plant-specificity: 100%)
GP052558 (11) ,
(plant-specificity: 100%)
GP052075 (11) ,
(plant-specificity: 100%)
GP053482 (10) ,
(plant-specificity: 100%)
GP048895 (10) ,
(plant-specificity: 100%)
GP121828 (9) ,
(plant-specificity: 100%)
GP122208 (8) ,
(plant-specificity: 100%)
GP050392 (9) ,
(plant-specificity: 100%)
GP122845 (7) ,
(plant-specificity: 100%)
GP054729 (7) ,
(plant-specificity: 100%)
GP122882 (7) ,
(plant-specificity: 100%)
GP122908 (7) ,
(plant-specificity: 100%)
GP122925 (7) ,
(plant-specificity: 100%)
GP122942 (7) ,
(plant-specificity: 100%)
GP122951 (7) ,
(plant-specificity: 100%)
GP122978 (7) , GP123373 (6) ,
(plant-specificity: 100%)
GP051826 (6) ,
(plant-specificity: 100%)
GP061660 (7) , GP124607 (3) ,
(plant-specificity: 100%)
GP055347 (5) ,
(plant-specificity: 100%)
GP124702 (5) ,
(plant-specificity: 100%)
GP052410 (6) , GP125020 (5) , GP125808 (4) ,
(plant-specificity: 100%)
GP054551 (5) , GP055183 (4) , GP126193 (4) , GP126218 (7) , GP126244 (4) , GP055199 (4) , GP058303 (4) , GP127884 (3) , GP127985 (3) , GP128298 (3) , GP065497 (2) , GP055216 (3) , GP129185 (3) , GP129186 (3) , GP129812 (3) , GP131070 (3) , GP131567 (3)
4 GP069368 (1675) , GP069612 (750) , GP069439 (682) , GP069596 (481) , GP069807 (347) ,
(plant-specificity: 42%)
GP076570 (47) ,
(plant-specificity: 100%)
GP076561 (41) ,
(plant-specificity: 100%)
GP079979 (26) ,
(plant-specificity: 100%)
GP133118 (21) ,
(plant-specificity: 100%)
GP086609 (21) ,
(plant-specificity: 100%)
GP133306 (19) ,
(plant-specificity: 100%)
GP133650 (16) , GP078432 (15) ,
(plant-specificity: 100%)
GP133893 (14) ,
(plant-specificity: 100%)
GP134124 (13) ,
(plant-specificity: 100%)
GP094790 (13) ,
(plant-specificity: 100%)
GP079044 (13) ,
(plant-specificity: 100%)
GP094894 (12) ,
(plant-specificity: 100%)
GP134459 (12) ,
(plant-specificity: 100%)
GP082101 (11) ,
(plant-specificity: 100%)
GP083585 (11) ,
(plant-specificity: 100%)
GP082312 (9) ,
(plant-specificity: 100%)
GP081536 (9) ,
(plant-specificity: 100%)
GP135644 (9) ,
(plant-specificity: 100%)
GP079992 (8) ,
(plant-specificity: 100%)
GP136797 (7) ,
(plant-specificity: 100%)
GP079923 (7) ,
(plant-specificity: 100%)
GP086461 (7) ,
(plant-specificity: 100%)
GP095392 (7) , GP137061 (7) ,
(plant-specificity: 100%)
GP137071 (7) ,
(plant-specificity: 100%)
GP137110 (7) ,
(plant-specificity: 100%)
GP137132 (7) ,
(plant-specificity: 100%)
GP137150 (7) ,
(plant-specificity: 100%)
GP137159 (7) ,
(plant-specificity: 100%)
GP137187 (7) ,
(plant-specificity: 100%)
GP138002 (6) ,
(plant-specificity: 100%)
GP082659 (6) , GP138105 (6) ,
(plant-specificity: 100%)
GP083442 (6) ,
(plant-specificity: 100%)
GP096347 (6) ,
(plant-specificity: 100%)
GP080326 (6) , GP138959 (5) ,
(plant-specificity: 100%)
GP139059 (5) , GP086240 (5) ,
(plant-specificity: 100%)
GP086253 (5) ,
(plant-specificity: 100%)
GP087203 (5) ,
(plant-specificity: 100%)
GP139632 (5) ,
(plant-specificity: 100%)
GP139675 (5) , GP140011 (5) , GP141323 (4) , GP089228 (4) , GP141533 (4) , GP086998 (4) , GP141657 (4) , GP087019 (4) , GP091373 (4) , GP086785 (4) , GP091014 (4) , GP143802 (3) , GP143919 (3) , GP144060 (3) , GP144069 (3) , GP144521 (3) , GP144879 (3) , GP145276 (3) , GP145278 (3) , GP145280 (3) , GP145344 (3) , GP145585 (3) , GP087034 (3) , GP145877 (3) , GP145882 (3) , GP146782 (3) , GP148297 (3) , GP148858 (3) , GP149387 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 4574
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
3 3
34 36
22 22
120 120
58 58
168 168
174 174
160 160
140 140
145 182
103 110
94 94
140 140
136 208
111 114
65 65
117 117
108 108
75 75
114 142
92 92
161 161
156 279
109 109
176 299
106 106
136 136
88 110
243 243
126 126
127 132
78 78
93 109
187 255
99 99


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NAC domain
IPR003441
NAC domain Domain 89 (4073) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003441


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Species
Information to display
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