Family GP000183


Family ID GP000183  add to my list RDF
Family name Chalcone/stilbene synthase superfamily   suggest a name
Cross-reference(s) PMID:
The role of cysteines in polyketide synthases. Site-directed mutagenesis of resveratrol and chalcone synthases, two key enzymes in different plant-specific pathways.
2033084
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Chalcone/stilbene synthase superfamily
GP000183 (954)
2
Very-long-chain 3-ketoacyl-CoA synthase family
GP015138 (950) , GP114985 (4)
3 GP039877 (950) , GP127091 (4)
4 GP069393 (943) ,
(plant-specificity: 92%)
GP087295 (7) , GP142838 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 954
Species Count (w/o splice) Count (w/ splice)
1 1
5 5
16 19
7 7
44 44
33 33
33 33
30 30
24 24
20 20
30 37
28 28
25 25
35 35
30 39
31 31
23 23
24 24
24 24
21 21
21 23
14 14
25 25
27 35
23 23
38 40
19 19
31 31
15 16
60 60
25 25
39 39
19 19
19 19
36 38
25 25


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Very-long-chain 3-ketoacyl-CoA synthase
IPR012392
Very-long-chain 3-ketoacyl-CoA synthase Family 68 (649) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
FAE1/Type III polyketide synthase-like protein
IPR013601
FAE1/Type III polyketide synthase-like protein Domain 92 (881) No
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal
IPR013747
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal Domain 76 (724) No
Thiolase-like, subgroup
IPR016038
Thiolase-like, subgroup Domain 94 (892) No
Thiolase-like
IPR016039
Thiolase-like Domain 92 (882) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013601 IPR016038 IPR012392 IPR016039 IPR013747


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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
954 920 (96%) 774 (81%) [52; 483; 3033] ~428 5998 362