Family GP002718


Family ID GP002718  add to my list RDF
Family name TBP-associated factor 15 homologs family   suggest a name
Comment
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
TBP-associated factor 15 homologs family (plant-specificity: 50%)
GP002718 (926)
2
Zinc finger, RanBP2-type domain containing family
GP016244 (185) ,
(plant-specificity: 50%)
GP108947 (158) , GP016882 (132) ,
(plant-specificity: 99%)
GP019567 (78) ,
(plant-specificity: 60%)
GP019630 (76) , GP018717 (73) ,
(plant-specificity: 12%)
GP021649 (65) ,
(plant-specificity: 100%)
GP019559 (60) ,
(plant-specificity: 100%)
GP022716 (51) ,
(plant-specificity: 100%)
GP109355 (46)
3 GP040874 (185) , GP041017 (158) , GP041515 (132) , GP044517 (76) , GP044458 (75) , GP043470 (73) ,
(plant-specificity: 12%)
GP046554 (65) ,
(plant-specificity: 100%)
GP048000 (49) ,
(plant-specificity: 100%)
GP046745 (47) ,
(plant-specificity: 100%)
GP046014 (46) ,
(plant-specificity: 100%)
GP049530 (13) , GP128885 (3)
4 GP070279 (185) , GP072201 (153) , GP071336 (132) , GP074078 (76) ,
(plant-specificity: 99%)
GP078004 (75) , GP072985 (73) , GP132417 (64) ,
(plant-specificity: 100%)
GP075670 (46) ,
(plant-specificity: 100%)
GP076764 (45) ,
(plant-specificity: 100%)
GP079144 (35) ,
(plant-specificity: 100%)
GP079497 (13) , GP137797 (6) ,
(plant-specificity: 100%)
GP139029 (5) ,
(plant-specificity: 100%)
GP139528 (5) , GP093785 (3) , GP145441 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 926
Species Count (w/o splice) Count (w/ splice)
4 4
6 6
8 12
12 12
27 27
15 15
30 30
27 27
24 24
22 22
18 39
15 25
19 19
17 17
30 86
16 20
14 14
17 17
22 22
15 15
14 18
15 15
27 27
26 71
16 16
25 68
15 15
19 19
17 31
36 36
15 15
18 18
19 19
19 27
41 60
18 18


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, RanBP2-type
IPR001876
Zinc finger, RanBP2-type Domain 77 (711) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001876


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
926 698 (75%) 500 (54%) [36; 326; 2066] ~356 5403 55