Family GP002796


Family ID GP002796  add to my list RDF
Family name Curculin-like (mannose-binding) lectin domain containing group   suggest a name
Comment
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Curculin-like (mannose-binding) lectin domain containing group (plant-specificity: 30%)
GP002796 (124)
2
(plant-specificity: 9%)
GP022813 (67) ,
(plant-specificity: 50%)
GP023070 (16) ,
(plant-specificity: 9%)
GP023069 (16) , GP029120 (4) , GP115796 (3) , GP038500 (3) , GP038437 (3) , GP117658 (3) , GP031786 (3)
3
(plant-specificity: 9%)
GP052497 (25) ,
(plant-specificity: 60%)
GP048110 (16) , GP049155 (13) ,
(plant-specificity: 40%)
GP050540 (10) ,
(plant-specificity: 11%)
GP058654 (9) ,
(plant-specificity: 35%)
GP052495 (8) ,
(plant-specificity: 93%)
GP052658 (6) ,
(plant-specificity: 84%)
GP055904 (5) , GP056205 (4) ,
(plant-specificity: 40%)
GP054019 (5) , GP128208 (3) , GP067920 (3) , GP067766 (3) , GP067851 (2) , GP130888 (3) , GP059702 (3)
4
(plant-specificity: 50%)
GP091403 (16) , GP078460 (16) ,
(plant-specificity: 40%)
GP081016 (10) , GP135351 (9) ,
(plant-specificity: 25%)
GP080957 (8) ,
(plant-specificity: 16%)
GP083523 (6) ,
(plant-specificity: 93%)
GP083673 (6) ,
(plant-specificity: 84%)
GP087821 (5) , GP141135 (4) , GP088150 (4) , GP085422 (4) , GP091397 (3) , GP144374 (3) , GP102674 (3) , GP102511 (3) , GP147498 (3) , GP148053 (3) , GP092533 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 124
Species Count (w/o splice) Count (w/ splice)
3 3
86 86
9 9
6 6
11 11
1 1
8 8


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Bulb-type lectin domain
IPR001480
Bulb-type lectin domain Domain 90 (112) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001480


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
124 124 (100%) 122 (98%) [50; 97; 365] ~137 734 52


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
124 122 (98%) 1.38543 1.33751 0.348714



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Species



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