Family GP001989
Family ID | GP001989 add to my list RDF |
---|---|
Family name | Expressed or hypothetical protein group suggest a name |
Curation status ? |
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Found in | Embryophyta |
Phylogenetic analyzes |
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Clustering level | Family ID (number of sequences) |
---|---|
1 |
Expressed or hypothetical protein group (plant-specificity: 88%)
GP001989
(120)
|
2 | GP017385 (118) |
3 | GP042165 (115) , GP056669 (3) |
4 | GP071594 (115) , GP088800 (3) |
Table 1:
This table displays which relationship has the selected family with other
families in GreenPhyl clustering
?.
Legend:
-
Families (clustering)
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Selected family is highlighted like this.
- Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
- Gene families are coloured in this color when the phylogenetic analyses are available.
(click on chart bars above to get species proteins)

No IPR family

No other significant IPR (i.e. > 25%)


(click on the button above to get your protein list)
Alignment not available.
[Masking step 1 details]
[Masking step 2 details]
[Filtration details]
[Global HMM file]
Phylogeny tree not available.
Alignment and filtration statistics:
Overall family sequences | Sequences used for alignment (w/o splice) | Sequences kept after filtration | [min; median; max] ~average sequence length | Alignment length | Masked alignment length |
---|---|---|---|---|---|
120 | 103 (86%) | 85 (71%) | [61; 489; 1282] ~443 | 2160 | 426 |