Family GP000227


Family ID GP000227  add to my list RDF
Family name Dynamin superfamily   suggest a name
Cross-reference(s) PMID:
Members of the Arabidopsis dynamin-like gene family, ADL1, are essential for plant cytokinesis and polarized cell growth.
12671086
Family Ontology
Close Hide
molecular_function
protein binding
GO:0005515 (1%) - protein binding
biological_process
catabolic process
GO:0009056 (1%) - catabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Dynamin superfamily
GP000227 (920)
2 GP015453 (643) , GP016946 (143) , GP017737 (128) ,
(plant-specificity: 33%)
GP113083 (6)
3
Dynamin GTPase family
GP040110 (499) , GP041754 (144) ,
Interferon-induced Mx family
GP041588 (143) , GP044934 (74) ,
(plant-specificity: 30%)
GP047095 (54) ,
(plant-specificity: 33%)
GP123400 (6)
4 GP069852 (336) , GP071103 (163) , GP071167 (144) , GP070976 (143) , GP074553 (74) ,
(plant-specificity: 30%)
GP076919 (54) ,
(plant-specificity: 33%)
GP137705 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 920
Species Count (w/o splice) Count (w/ splice)
J " 2 2
14 14
10 10
32 41
12 12
58 58
8 8
19 19
21 21
23 23
25 25
19 24
11 14
11 11
15 15
19 31
14 15
18 18
21 21
26 26
18 18
13 22
15 15
40 40
30 65
21 21
29 61
15 15
21 21
13 23
62 62
26 26
27 31
16 16
16 18
36 41
17 17


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Dynamin superfamily
IPR022812
Dynamin superfamily Family 72 (662) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Dynamin central domain
IPR000375
Dynamin central domain Domain 69 (631) No
Dynamin, GTPase domain
IPR001401
Dynamin, GTPase domain Domain 74 (685) No
Dynamin GTPase effector
IPR003130
Dynamin GTPase effector Domain 59 (543) No
GTPase effector domain, GED
IPR020850
GTPase effector domain, GED Domain 57 (527) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR020850 IPR022812 IPR001401 IPR003130 IPR000375


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
920 788 (86%) 544 (59%) [41; 611; 1320] ~556 3760 222