Family GP000209


Family ID GP000209  add to my list RDF
Family name Lipoxygenase plant family   suggest a name
Synonym(s) LOX family
Cross-reference(s) PMID:
A new 9-lipoxygenase cDNA from developing rice seeds.
14634153 PMID:
cDNA cloning of rice lipoxygenase L-2 and characterization using an active enzyme expressed from the cDNA in Escherichia coli.
1597177 PMID:
A novel lipoxygenase from rice. Primary structure and specific expression upon incompatible infection with rice blast fungus.
7508918 PMID:
An Arabidopsis thaliana lipoxygenase gene can be induced by pathogens, abscisic acid, and methyl jasmonate.
7506426 PMID:
Structure and sequence of the Arabidopsis thaliana lipoxygenase 1 gene.
8305494 PMID:
Characterization of an Arabidopsis lipoxygenase gene responsive to methyl jasmonate and wounding.
8290626 PMID:
Primary structure of soybean lipoxygenase L-2.
2834391 PMID:
Nucleotide sequences of a soybean lipoxygenase gene and the short intergenic region between an upstream lipoxygenase gene.
1909908 PMID:
Position 713 is critical for catalysis but not iron binding in soybean lipoxygenase 3.
7999759 PMID:
Structure of soybean lipoxygenase L3 and a comparison with its L1 isoenzyme.
9294864 PMID:
Structural and thermochemical characterization of lipoxygenase-catechol complexes.
9922163 PMID:
Three-dimensional structure of a purple lipoxygenase.
11686682 PMID:
Structure of curcumin in complex with lipoxygenase and its significance in cancer.
12792803 PMID:
Inhibition of lipoxygenase by (-)-epigallocatechin gallate: X-ray analysis at 2.1 A reveals degradation of EGCG and shows soybean LOX-3 complex with EGC instead.
12964012 PMID:
Soybean lipoxygenase-3 in complex with 4-nitrocatechol.
14993710 PMID:
Lipoxygenase interactions with natural flavonoid, quercetin, reveal a complex with protocatechuic acid in its X-ray structure at 2.1 A resolution.
14705020 PMID:
Appearance of new lipoxygenases in soybean cotyledons after germination and evidence for expression of a major new lipoxygenase gene.
16668631 PMID:
Crystal structures of vegetative soybean lipoxygenase VLX-B and VLX-D, and comparisons with seed isoforms LOX-1 and LOX-3.
17022084
Family Ontology
Close Hide
molecular_function
linoleate 13S-lipoxygenase activity
GO:0016165 (75%) - linoleate 13S-lipoxygenase activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Lipoxygenase plant family (plant-specificity: 30%)
GP000209 (901)
2 GP015165 (899)
3 GP039866 (895)
4 GP069384 (895)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 901
Species Count (w/o splice) Count (w/ splice)
1 1
18 22
16 16
59 59
14 14
17 17
16 16
29 29
12 12
17 24
11 11
17 17
14 14
13 30
12 14
12 12
22 22
29 29
15 15
6 6
18 18
38 38
20 34
26 26
22 34
14 14
23 23
31 37
55 55
44 44
47 53
21 21
32 33
56 68
23 23


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Lipoxygenase, plant
IPR001246
Lipoxygenase, plant Family 75 (677) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
PLAT/LH2 domain
IPR001024
PLAT/LH2 domain Domain 69 (624) No
Lipase/lipooxygenase, PLAT/LH2
IPR008976
Lipase/lipooxygenase, PLAT/LH2 Domain 68 (613) No
Lipoxygenase, C-terminal
IPR013819
Lipoxygenase, C-terminal Domain 89 (805) No
Lipoxygenase, iron binding site
IPR020833
Lipoxygenase, iron binding site Binding_site 54 (488) No
Lipoxygenase, conserved site
IPR020834
Lipoxygenase, conserved site Conserved_site 62 (555) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001024 IPR008976 IPR013819 IPR020833 IPR001246 IPR020834


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
901 820 (91%) 564 (63%) [31; 824; 12011] ~667 23265 581