Family GP000261


Family ID GP000261  add to my list RDF
Family name Protein of unknown function DUF239, plant   suggest a name
Family Ontology
Close Hide
N/A
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Protein of unknown function DUF239, plant (plant-specificity: 19%)
GP000261 (899)
2 GP015195 (888) , GP030387 (3) , GP116352 (2)
3 GP039905 (882) , GP126297 (4) , GP053230 (4) , GP057948 (3) , GP129140 (2) , GP131908 (3)
4 GP069420 (881) , GP141815 (4) , GP141817 (4) , GP090591 (3) , GP149241 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 899
Species Count (w/o splice) Count (w/ splice)
9 9
18 18
10 10
20 20
28 28
24 24
29 29
11 11
44 47
19 19
33 33
31 31
14 30
16 19
39 39
30 30
26 26
23 23
50 56
15 15
15 15
15 30
12 12
16 32
9 9
15 15
13 18
21 21
49 49
61 63
41 41
20 20
28 36
21 21


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Domain of unknown function DUF239
IPR004314
Domain of unknown function DUF239 Domain 91 (818) No
Domain of unknown function DUF4409
IPR025521
Domain of unknown function DUF4409 Domain 72 (650) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004314 IPR025521


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
899 825 (92%) 609 (68%) [50; 373; 1464] ~334 4723 203