Family GP000195


Family ID GP000195  add to my list RDF
Family name Sam Dependent Carboxyl Methyltransferase family   suggest a name
Synonym(s) Jasmonate O-methyltransferase, jasmonate O-methyltransferase flavor
Cross-reference(s) PMID:
Structural basis for substrate recognition in the salicylic acid carboxyl methyltransferase family.
12897246 PMID:
Jasmonic acid carboxyl methyltransferase: a key enzyme for jasmonate-regulated plant responses.
11287667 PMID:
7-Methylxanthine methyltransferase of coffee plants. Gene isolation and enzymatic properties.
11108716 PMID:
Caffeine synthase gene from tea leaves.
10984041 PMID:
Developmental regulation of methyl benzoate biosynthesis and emission in snapdragon flowers.
10852939 PMID:
Functional analysis of a tomato salicylic acid methyl transferase and its role in synthesis of the flavor volatile methyl salicylate.
20070566
Family Ontology
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N/A
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Sam Dependent Carboxyl Methyltransferase family (plant-specificity: 19%)
GP000195 (897)
2 GP015159 (896)
3 GP039983 (896)
4 GP069491 (880) ,
(plant-specificity: 71%)
GP133950 (14) , GP090468 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 897
Species Count (w/o splice) Count (w/ splice)
4 4
10 10
85 85
13 13
21 21
16 16
9 9
6 6
41 53
12 15
8 8
14 14
14 15
18 18
55 55
26 26
23 23
41 41
25 30
24 25
34 34
22 24
39 39
30 45
20 20
25 25
13 15
73 73
20 20
28 28
10 10
18 21
30 39
17 17


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
SAM dependent carboxyl methyltransferase
IPR005299
SAM dependent carboxyl methyltransferase Family 96 (857) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005299


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
897 844 (94%) 661 (74%) [28; 353; 915] ~303 3538 207