Family GP002602


Family ID GP002602  add to my list RDF
Family name ZIM / TIFY family   suggest a name
Synonym(s) Jasmonate ZIM domain protein family
Cross-reference(s) PMID:
The tify family previously known as ZIM.
17499004 PMID:
Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana.
10945256
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
ZIM / TIFY family (plant-specificity: 100%)
GP002602 (889)
2 GP016287 (330) , GP016266 (188) ,
(plant-specificity: 100%)
GP018902 (85) ,
(plant-specificity: 100%)
GP020235 (84) ,
(plant-specificity: 100%)
GP020043 (66) ,
(plant-specificity: 100%)
GP021839 (54) ,
(plant-specificity: 100%)
GP109882 (21) ,
(plant-specificity: 100%)
GP110865 (16) ,
(plant-specificity: 100%)
GP111621 (8) ,
(plant-specificity: 100%)
GP111697 (9) ,
(plant-specificity: 100%)
GP112139 (6) , GP025953 (6) ,
(plant-specificity: 100%)
GP114949 (5) , GP117659 (3)
3 GP041009 (248) , GP041206 (169) ,
(plant-specificity: 100%)
GP045206 (84) ,
(plant-specificity: 100%)
GP043959 (81) ,
(plant-specificity: 100%)
GP045203 (61) ,
(plant-specificity: 100%)
GP056586 (37) ,
(plant-specificity: 100%)
GP047531 (52) ,
(plant-specificity: 100%)
GP054340 (45) ,
(plant-specificity: 100%)
GP119806 (20) ,
(plant-specificity: 100%)
GP120146 (16) ,
(plant-specificity: 100%)
GP048365 (19) ,
(plant-specificity: 100%)
GP121820 (9) ,
(plant-specificity: 100%)
GP122200 (8) ,
(plant-specificity: 100%)
GP050277 (6) , GP054866 (6) , GP124472 (5) ,
(plant-specificity: 100%)
GP124498 (5) , GP128573 (3) , GP128824 (4) , GP130890 (3)
4 GP070969 (150) , GP073535 (132) , GP071998 (102) , GP073477 (77) , GP074824 (61) ,
(plant-specificity: 100%)
GP077177 (54) ,
(plant-specificity: 100%)
GP077341 (45) ,
(plant-specificity: 100%)
GP077393 (42) ,
(plant-specificity: 100%)
GP080100 (37) ,
(plant-specificity: 100%)
GP133199 (20) ,
(plant-specificity: 100%)
GP078743 (19) ,
(plant-specificity: 100%)
GP133462 (17) ,
(plant-specificity: 100%)
GP133611 (16) ,
(plant-specificity: 100%)
GP133955 (14) ,
(plant-specificity: 100%)
GP134155 (13) ,
(plant-specificity: 100%)
GP137124 (7) ,
(plant-specificity: 100%)
GP082067 (6) ,
(plant-specificity: 100%)
GP138285 (6) , GP139258 (5) ,
(plant-specificity: 100%)
GP139297 (5) , GP140859 (4) , GP141434 (4) , GP086491 (4) , GP141668 (4) , GP086648 (4) , GP144225 (3) , GP144721 (3) , GP144927 (3) , GP144928 (3) , GP145343 (3) , GP146226 (3) , GP148055 (3) , GP148062 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 889
Species Count (w/o splice) Count (w/ splice)
12 16
9 9
78 78
8 8
45 45
39 39
17 17
12 12
17 24
17 21
14 14
19 19
36 51
17 17
9 9
18 18
16 16
14 14
16 27
12 12
37 37
20 52
14 14
18 75
12 12
33 33
14 39
29 29
10 10
16 22
11 11
15 19
30 56
14 14


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Tify
IPR010399
Tify Domain 83 (742) No
CO/COL/TOC1, conserved site
IPR018467
CO/COL/TOC1, conserved site Conserved_site 69 (612) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR010399 IPR018467


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
889 698 (79%) 631 (71%) [30; 234; 545] ~248 2245 47




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Species



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