Family GP000253


Family ID GP000253  add to my list RDF
Family name AmbAllergen family   suggest a name
Cross-reference(s) PMID:
Classification and characterization of the rice alpha-amylase multigene family.
2102847
Family Ontology
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molecular_function
pectate lyase activity
GO:0030570 (17%) - pectate lyase activity
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
AmbAllergen family
GP000253 (889)
2
AmbAllergen family
GP015214 (889)
3 GP039917 (889)
4 GP069427 (794) , GP072537 (95)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 889
Species Count (w/o splice) Count (w/ splice)
30 35
12 12
70 70
13 13
19 19
18 18
16 16
13 13
13 15
8 8
6 6
12 12
15 24
10 10
24 24
25 25
24 24
18 18
26 30
16 16
35 35
61 80
16 16
31 43
17 17
30 30
17 20
50 50
25 25
45 45
31 31
25 25
40 42
22 22


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
AmbAllergen
IPR018082
AmbAllergen Family 89 (790) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pectate lyase/Amb allergen
IPR002022
Pectate lyase/Amb allergen Domain 90 (800) No
Pectin lyase fold/virulence factor
IPR011050
Pectin lyase fold/virulence factor Domain 93 (830) No
Pectin lyase fold
IPR012334
Pectin lyase fold Domain 94 (832) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011050 IPR012334 IPR002022 IPR018082


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
889 833 (94%) 732 (82%) [49; 396; 1004] ~367 3225 300




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