Family GP000280


Family ID GP000280  add to my list RDF
Family name Argonaute family   suggest a name
Synonym(s) ZWILLE gene family
Cross-reference(s) PMID:
The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene.
9876176 PMID:
Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis.
9501101
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Argonaute family
GP000280 (849)
2 GP015209 (836) , GP114390 (4) , GP114465 (4) , GP116196 (2)
3 GP039903 (831) ,
(plant-specificity: 100%)
GP121689 (10) , GP126237 (4) , GP126370 (4) , GP128901 (3) , GP129878 (3)
4 GP069424 (830) ,
(plant-specificity: 100%)
GP100472 (10) , GP141714 (4) , GP141915 (4) , GP145460 (3) , GP146849 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 849
Species Count (w/o splice) Count (w/ splice)
4 4
9 9
7 7
49 49
17 17
21 21
16 16
37 37
19 19
24 31
18 21
19 19
26 26
31 44
22 23
13 13
13 13
21 21
15 15
10 14
10 10
36 36
16 60
24 24
19 36
13 13
14 14
7 19
46 46
37 37
42 44
14 14
14 18
32 45
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Argonaute/Dicer protein, PAZ
IPR003100
Argonaute/Dicer protein, PAZ Domain 72 (614) No
Stem cell self-renewal protein Piwi
IPR003165
Stem cell self-renewal protein Piwi Domain 77 (653) No
Ribonuclease H-like domain
IPR012337
Ribonuclease H-like domain Domain 76 (645) No
Domain of unknown function DUF1785
IPR014811
Domain of unknown function DUF1785 Domain 63 (534) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003165 IPR003100 IPR012337 IPR014811


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
849 728 (86%) 464 (55%) [40; 887; 2583] ~706 6664 429