Family GP002618


Family ID GP002618  add to my list RDF
Family name WD40 repeat group   suggest a name
Comment
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
WD40 repeat group (plant-specificity: 58%)
GP002618 (104)
2
(plant-specificity: 44%)
GP018828 (100) , GP038290 (4)
3 GP043594 (100) , GP067691 (4)
4 GP073109 (100)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 104
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
7 7
4 4
4 4
2 2
6 6
9 9
6 6
3 4
1 1
1 1
1 1
4 5
1 1
1 1
1 1
1 1
2 2
1 1
5 5
4 4
6 12
1 1
1 3
2 2
3 3
1 1
4 4
1 1
1 1
1 1
1 1
4 5
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
WD40-repeat-containing domain
IPR017986



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
104 93 (89%) 41 (39%) [54; 615; 1516] ~714 2902 517