Family GP000028


Family ID GP000028  add to my list RDF
Family name MADS transcription factor family   suggest a name
Cross-reference(s) PMID:
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
12837945 PMID:
Antiquity and evolution of the MADS-box gene family controlling flower development in plants.
12777513
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
MADS transcription factor family (plant-specificity: 60%)
GP000028 (4022)
2
MIKC subfamily
GP015070 (3183) ,
Mgamma-I subfamily
GP015494 (458) ,
(plant-specificity: 92%)
GP109173 (66) ,
(plant-specificity: 82%)
GP021736 (41) ,
(plant-specificity: 97%)
GP025797 (33) ,
(plant-specificity: 100%)
GP109655 (28) ,
Mbeta subfamily (plant-specificity: 100%)
GP023548 (18) ,
(plant-specificity: 30%)
GP110681 (19) ,
(plant-specificity: 80%)
GP110884 (14) ,
(plant-specificity: 100%)
GP023445 (12) ,
(plant-specificity: 90%)
GP111338 (10) ,
(plant-specificity: 100%)
GP111363 (9) ,
(plant-specificity: 100%)
GP111426 (6) ,
(plant-specificity: 100%)
GP111596 (9) ,
(plant-specificity: 100%)
GP025711 (7) ,
(plant-specificity: 100%)
GP112545 (6) ,
(plant-specificity: 98%)
GP112547 (6) ,
(plant-specificity: 100%)
GP112568 (6) , GP112609 (3) ,
(plant-specificity: 100%)
GP113352 (5) ,
(plant-specificity: 100%)
GP114274 (5) , GP114354 (4) , GP114467 (4) , GP114495 (4) , GP114748 (2) , GP032337 (3) , GP115774 (3) , GP115977 (3) , GP116044 (3) , GP116048 (3) ,
Ma-IV subfamily
GP029324 (3) , GP029351 (3) , GP034269 (4) , GP116388 (2) , GP030406 (3) , GP116696 (3) , GP117478 (3)
3 GP039797 (2454) , GP039981 (614) , GP040184 (420) ,
(plant-specificity: 30%)
GP118882 (82) ,
(plant-specificity: 100%)
GP049052 (58) ,
(plant-specificity: 82%)
GP046841 (41) ,
(plant-specificity: 100%)
GP119539 (25) ,
(plant-specificity: 30%)
GP119609 (19) ,
(plant-specificity: 100%)
GP119716 (21) ,
(plant-specificity: 100%)
GP049212 (16) ,
(plant-specificity: 85%)
GP120247 (15) ,
(plant-specificity: 80%)
GP120456 (14) ,
(plant-specificity: 97%)
GP120815 (14) ,
(plant-specificity: 98%)
GP049959 (12) ,
(plant-specificity: 90%)
GP121388 (10) ,
(plant-specificity: 100%)
GP050716 (9) ,
(plant-specificity: 100%)
GP051820 (7) ,
(plant-specificity: 100%)
GP122939 (8) ,
(plant-specificity: 100%)
GP122945 (7) ,
(plant-specificity: 100%)
GP123477 (6) ,
(plant-specificity: 100%)
GP123574 (6) ,
(plant-specificity: 98%)
GP123579 (6) ,
(plant-specificity: 100%)
GP123614 (6) ,
(plant-specificity: 100%)
GP123659 (6) ,
(plant-specificity: 100%)
GP050585 (8) ,
(plant-specificity: 100%)
GP124764 (5) ,
(plant-specificity: 100%)
GP124768 (5) ,
(plant-specificity: 100%)
GP124998 (5) , GP125813 (4) , GP062994 (4) ,
(plant-specificity: 100%)
GP126065 (5) ,
(plant-specificity: 100%)
GP051980 (5) , GP126177 (4) , GP126276 (3) , GP126372 (4) , GP126398 (4) , GP126408 (4) , GP128157 (3) , GP128168 (3) , GP052892 (3) , GP128509 (3) , GP128635 (3) , GP128642 (3) , GP056457 (3) , GP056488 (3) , GP057733 (3) , GP128903 (2) , GP128920 (3) , GP129191 (2) , GP057974 (3) , GP129699 (3) , GP129700 (3) , GP130661 (3) , GP131918 (3)
4
MIKC/Ma-I group
GP069330 (1881) , GP069513 (578) ,
(plant-specificity: 30%)
GP093174 (501) , GP069664 (407) , GP072716 (82) ,
(plant-specificity: 63%)
GP082827 (40) ,
(plant-specificity: 100%)
GP079248 (36) ,
(plant-specificity: 95%)
GP076624 (32) ,
(plant-specificity: 100%)
GP132926 (25) ,
(plant-specificity: 100%)
GP082861 (20) ,
(plant-specificity: 30%)
GP133254 (19) ,
(plant-specificity: 100%)
GP133351 (18) ,
(plant-specificity: 95%)
GP133395 (18) ,
(plant-specificity: 70%)
GP133718 (15) ,
(plant-specificity: 97%)
GP133963 (14) ,
(plant-specificity: 80%)
GP133965 (14) ,
(plant-specificity: 100%)
GP079430 (13) ,
(plant-specificity: 90%)
GP135080 (10) ,
(plant-specificity: 100%)
GP081294 (9) ,
(plant-specificity: 77%)
GP089661 (9) ,
(plant-specificity: 73%)
GP135544 (9) ,
(plant-specificity: 82%)
GP135581 (9) ,
(plant-specificity: 100%)
GP081064 (8) ,
(plant-specificity: 100%)
GP136312 (8) ,
(plant-specificity: 100%)
GP082648 (7) ,
(plant-specificity: 100%)
GP137720 (6) ,
(plant-specificity: 100%)
GP087024 (6) ,
(plant-specificity: 100%)
GP138001 (6) ,
(plant-specificity: 98%)
GP138008 (6) ,
(plant-specificity: 100%)
GP138065 (6) ,
(plant-specificity: 100%)
GP138139 (6) ,
(plant-specificity: 66%)
GP138218 (6) ,
(plant-specificity: 65%)
GP139005 (5) , GP139095 (5) ,
(plant-specificity: 100%)
GP139365 (5) ,
(plant-specificity: 100%)
GP082944 (5) ,
(plant-specificity: 84%)
GP086266 (5) , GP139515 (5) ,
(plant-specificity: 100%)
GP139701 (5) ,
(plant-specificity: 100%)
GP139705 (5) ,
(plant-specificity: 100%)
GP139709 (5) ,
(plant-specificity: 100%)
GP139987 (5) , GP140983 (4) , GP097032 (4) , GP141453 (4) , GP141629 (4) , GP141916 (4) , GP141956 (4) , GP141970 (4) , GP143931 (3) , GP143987 (3) , GP144238 (3) , GP144259 (3) , GP084064 (3) , GP144424 (3) , GP144824 (3) , GP145028 (3) , GP145054 (3) , GP145085 (3) , GP088431 (3) , GP088470 (3) , GP097378 (3) , GP145494 (3) , GP145501 (3) , GP099380 (3) , GP145879 (3) , GP090624 (3) , GP146640 (3) , GP146641 (3) , GP147764 (3) , GP149253 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 4022
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
7 7
25 31
16 16
116 116
40 40
96 96
91 91
76 76
76 76
83 114
60 81
50 50
106 106
90 164
68 75
64 64
191 191
124 124
57 57
117 162
301 338
109 109
144 299
82 82
116 202
61 61
104 104
50 76
173 173
110 110
161 163
77 77
91 112
187 274
102 102


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor, MADS-box
IPR002100
Transcription factor, MADS-box Domain 81 (3239) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002100


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Species
Information to display
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