Family GP002868


Family ID GP002868  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group
GP002868 (98)
2 GP018967 (98)
3 GP043748 (98)
4 GP073255 (98)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 98
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
7 7
3 4
2 2
3 3
1 1
1 1
1 1
1 1
1 1
1 2
1 1
1 1
2 2
1 3
1 1
1 1
1 1
1 1
1 1
1 4
1 1
14 14
1 8
1 1
1 3
1 1
2 2
1 4
3 3
3 3
2 2
3 3
2 2
5 7
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
HAD-like domain
IPR023214
HAD-like domain Domain 74 (73) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023214


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
98 77 (79%) 72 (73%) [53; 269; 638] ~247 851 263


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
98 72 (73%) 0.943769 0.917832 0.128521



for (default: all):
Species



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