Family GP000276


Family ID GP000276  add to my list RDF
Family name Translation elongation factor EFG/EF2 family   suggest a name
Comment
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Translation elongation factor EFG/EF2 family
GP000276 (829)
2
Elongation factor EF-2 family
GP015972 (310) , GP016353 (208) , GP017032 (154) , GP017148 (154)
3 GP040611 (310) , GP041056 (208) , GP041676 (154) , GP041704 (154)
4 GP070063 (310) , GP070459 (201) , GP073556 (154) , GP071069 (147) ,
(plant-specificity: 57%)
GP136684 (7) , GP088564 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 829
Species Count (w/o splice) Count (w/ splice)
8 8
10 10
121 121
28 32
15 15
35 35
16 16
15 15
14 14
19 19
17 17
15 19
14 15
20 20
12 12
17 29
13 14
16 16
7 7
11 11
10 10
12 17
13 13
28 28
16 28
10 10
17 35
12 12
19 19
12 16
47 47
20 20
55 55
13 13
10 13
29 34
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Translation elongation factor EFG/EF2
IPR004540
Translation elongation factor EFG/EF2 Family 13 (106) Yes
Peptide chain release factor 3
IPR004548
Peptide chain release factor 3 Family 1 (3) Yes
Elongation factor 4
IPR006297
Elongation factor 4 Family 11 (88) Yes
GTP-binding protein TypA
IPR006298
GTP-binding protein TypA Family 10 (80) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Translation elongation factor EFG, V domain
IPR000640
Translation elongation factor EFG, V domain Domain 67 (553) No
Elongation factor, GTP-binding domain
IPR000795
Elongation factor, GTP-binding domain Domain 73 (608) No
Translation elongation factor EFTu/EF1A, domain 2
IPR004161
Translation elongation factor EFTu/EF1A, domain 2 Domain 64 (528) No
Small GTP-binding protein domain
IPR005225
Small GTP-binding protein domain Domain 59 (492) No
Translation elongation/initiation factor/Ribosomal, beta-barrel
IPR009000
Translation elongation/initiation factor/Ribosomal, beta-barrel Domain 69 (574) No
Elongation factor G, III-V domain
IPR009022
Elongation factor G, III-V domain Domain 72 (595) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005225 IPR009000 IPR000795 IPR000640 IPR009022
Translation elongation factor EFG/EF2, domain IV
IPR005517 IPR004161



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
829 760 (92%) 531 (64%) [33; 676; 1542] ~610 3367 192