Family GP000250


Family ID GP000250  add to my list RDF
Family name MLO family   suggest a name
Cross-reference(s) PMID:
Analysis and mapping of homologous sequences of barley disease resistance gene Mlo and maize disease resistance gene Hm1 in rice.
12561471 PMID:
Calmodulin interacts with MLO protein to regulate defence against mildew in barley.
11919636 PMID:
Molecular phylogeny and evolution of the plant-specific seven-transmembrane MLO family.
12569425
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
MLO family (plant-specificity: 100%)
GP000250 (793)
2 GP015187 (793)
3 GP039889 (790) , GP130589 (3)
4 GP069402 (790) , GP147683 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 793
Species Count (w/o splice) Count (w/ splice)
3 3
8 8
11 11
13 13
30 30
13 13
26 26
19 19
14 14
22 22
14 17
12 14
11 11
14 14
14 31
13 13
19 19
17 17
17 17
18 18
15 22
21 21
41 41
25 46
22 22
28 43
15 15
23 23
14 25
47 47
19 19
22 23
14 14
20 28
44 53
21 21


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Mlo-related protein
IPR004326
Mlo-related protein Family 94 (742) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004326


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
793 699 (88%) 546 (69%) [48; 498; 2332] ~438 3966 328