Family GP003664


Family ID GP003664  add to my list RDF
Family name Glutathione S-transferase superfamily   suggest a name
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Glutathione S-transferase superfamily
GP003664 (797)
2
Glutathione S transferase phi family
GP015478 (456) , GP017022 (146) ,
Glutathione S-transferase Theta family
GP018188 (96) ,
Tetrachlorohydroquinone dehalogenase-like family
GP020436 (70) , GP025258 (19) , GP114907 (6)
3 GP040143 (451) , GP041664 (146) , GP042882 (96) , GP045431 (70) , GP051281 (19) , GP054302 (5) , GP129132 (3) , GP129392 (3)
4 GP069642 (446) , GP071057 (145) , GP072386 (96) , GP075060 (58) , GP082024 (19) , GP134389 (12) , GP085793 (5) ,
(plant-specificity: 100%)
GP139733 (5) , GP145801 (3) , GP146193 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 797
Species Count (w/o splice) Count (w/ splice)
3 3
12 12
1 1
24 50
9 9
42 42
13 13
22 22
15 15
27 27
17 17
27 33
27 32
23 23
29 29
26 43
25 28
12 12
8 8
13 13
17 17
19 27
11 12
24 24
23 41
14 14
20 29
20 20
18 18
7<'td>  11
30 30
17 17
22 25
11 11
18 20
27 35
14 14


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glutathione S-transferase, N-terminal
IPR004045
Glutathione S-transferase, N-terminal Domain 75 (599) No
Glutathione S-transferase, C-terminal
IPR004046
Glutathione S-transferase, C-terminal Domain 70 (560) No
Glutathione S-transferase, C-terminal-like
IPR010987
Glutathione S-transferase, C-terminal-like Domain 88 (703) No
Thioredoxin-like fold
IPR012336
Thioredoxin-like fold Domain 82 (651) No
Glutathione S-transferase/chloride channel, C-terminal
IPR017933
Glutathione S-transferase/chloride channel, C-terminal Domain 85 (680) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012336 IPR004046 IPR004045 IPR010987 IPR017933


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
797 686 (86%) 584 (73%) [36; 223; 6123] ~293 9357 115




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