Family GP000316


Family ID GP000316  add to my list RDF
Family name Atp-dependent clp protease family (clpp)   suggest a name
Synonym(s) Peptidase S14, ClpP
Cross-reference(s) PMID:
Characterization of chloroplast Clp proteins in Arabidopsis: localization, tissue specificity and stress responses.
11982939 PMID:
Identification of clp genes expressed in senescing Arabidopsis leaves.
10427773 PMID:
Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease.
11352464
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Atp-dependent clp protease family (clpp)
GP000316 (772)
2 GP015429 (772)
3 GP040092 (701) ,
(plant-specificity: 11%)
GP118943 (69)
4 GP069755 (540) , GP073817 (91) , GP074826 (70) , GP074178 (69)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 772
Species Count (w/o splice) Count (w/ splice)
5 5
9 9
110 110
19 28
12 12
20 20
13 13
20 20
10 10
16 16
13 13
14 19
12 17
11 11
10 10
17 30
10 12
9 9
13 13
11 11
15 15
10 13
10 10
29 29
28 60
9 9
20 35
16 16
20 20
10 12
38 38
43 43
16 19
12 12
10 11
23 31
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
ClpP
IPR001907
ClpP Family 79 (611) No
Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR023562
Clp protease proteolytic subunit /Translocation-enhancing protein TepA Family 88 (679) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001907 IPR023562


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
772 673 (87%) 560 (73%) [41; 258; 742] ~241 1537 142