Family GP000437


Family ID GP000437  add to my list RDF
Family name OFP transcription Family   suggest a name
Synonym(s) Unknow function DUF623 family, Ovate family
Cross-reference(s) PMID:
A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.
15781858 PMID:
Arabidopsis Ovate Family Protein 1 is a transcriptional repressor that suppresses cell elongation.
17461792
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
OFP transcription Family (plant-specificity: 100%)
GP000437 (772)
2 GP015434 (491) , GP016972 (259) ,
(plant-specificity: 100%)
GP111093 (10) ,
(plant-specificity: 100%)
GP027605 (6)
3 GP040704 (473) , GP041831 (207) ,
(plant-specificity: 100%)
GP047704 (50) ,
(plant-specificity: 100%)
GP119433 (7) ,
(plant-specificity: 100%)
GP121384 (10) ,
(plant-specificity: 100%)
GP054226 (6) , GP056627 (4) ,
(plant-specificity: 100%)
GP053480 (5)
4 GP070738 (281) , GP071215 (145) ,
(plant-specificity: 100%)
GP080574 (144) , GP074299 (62) , GP078166 (44) ,
(plant-specificity: 100%)
GP132716 (33) ,
(plant-specificity: 100%)
GP135076 (10) ,
(plant-specificity: 100%)
GP136844 (7) ,
(plant-specificity: 100%)
GP085661 (6) ,
(plant-specificity: 100%)
GP083902 (6) ,
(plant-specificity: 100%)
GP084824 (5) ,
(plant-specificity: 100%)
GP086341 (5) , GP141109 (4) , GP088721 (4) , GP144351 (3) , GP144838 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 772
Species Count (w/o splice) Count (w/ splice)
10 10
5 5
13 13
12 12
32 32
47 47
26 26
18 18
35 35
27 27
24 24
34 34
42 42
33 33
13 13
25 25
26 26
8 8
18 18
10 10
15 15
30 30
13 13
29 29
16 16
23 23
18 18
33 33
16 16
21 21
18 18
20 20
42 42
20 20


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ovate protein family, C-terminal
IPR006458
Ovate protein family, C-terminal Domain 94 (725) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006458


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
772 772 (100%) 760 (98%) [51; 265; 1102] ~275 2275 54




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