Family GP002008


Family ID GP002008  add to my list RDF
Family name Ubiquinol-cytochrome c reductase family   suggest a name
Cross-reference(s) PMID:
Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex.
9651245
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ubiquinol-cytochrome c reductase family (plant-specificity: 90%)
GP002008 (788)
2 GP017482 (103) ,
(plant-specificity: 98%)
GP109076 (79) ,
(plant-specificity: 100%)
GP109084 (77) ,
(plant-specificity: 100%)
GP109177 (66) ,
(plant-specificity: 100%)
GP109270 (56) ,
(plant-specificity: 100%)
GP109468 (40) ,
(plant-specificity: 100%)
GP109492 (35) ,
(plant-specificity: 100%)
GP109574 (35) ,
Zinc finger (grf-type) family (plant-specificity: 100%)
GP023628 (29) ,
(plant-specificity: 100%)
GP109718 (25) ,
(plant-specificity: 100%)
GP109864 (23) ,
(plant-specificity: 100%)
GP109917 (21) ,
(plant-specificity: 100%)
GP110245 (17) ,
(plant-specificity: 100%)
GP110259 (20) ,
(plant-specificity: 100%)
GP110260 (12) ,
(plant-specificity: 100%)
GP110375 (15) ,
(plant-specificity: 100%)
GP110377 (19) ,
(plant-specificity: 100%)
GP110487 (13) ,
(plant-specificity: 100%)
GP110549 (12) ,
(plant-specificity: 100%)
GP110643 (13) ,
(plant-specificity: 100%)
GP111538 (8) ,
(plant-specificity: 100%)
GP112163 (6) ,
(plant-specificity: 100%)
GP112371 (5) ,
(plant-specificity: 100%)
GP028747 (6) ,
(plant-specificity: 100%)
GP113000 (6) , GP026252 (5) , GP031189 (3) ,
(plant-specificity: 100%)
GP113924 (6) ,
(plant-specificity: 100%)
GP113931 (5) , GP031161 (4) , GP032844 (3) , GP117791 (4) ,
(plant-specificity: 100%)
GP118542 (5) , GP118549 (3)
3 GP042360 (98) ,
(plant-specificity: 100%)
GP119096 (52) ,
(plant-specificity: 100%)
GP119314 (32) ,
(plant-specificity: 100%)
GP119502 (26) ,
(plant-specificity: 100%)
GP119558 (27) ,
(plant-specificity: 100%)
GP119715 (20) ,
(plant-specificity: 100%)
GP053224 (18) ,
(plant-specificity: 100%)
GP119779 (20) ,
(plant-specificity: 100%)
GP120563 (14) ,
(plant-specificity: 100%)
GP120565 (16) ,
(plant-specificity: 100%)
GP120627 (12) ,
(plant-specificity: 100%)
GP120720 (13) ,
(plant-specificity: 100%)
GP120738 (13) ,
(plant-specificity: 100%)
GP120916 (12) ,
(plant-specificity: 100%)
GP120929 (11) ,
(plant-specificity: 100%)
GP120930 (12) ,
(plant-specificity: 100%)
GP120960 (9) ,
(plant-specificity: 100%)
GP120965 (13) ,
(plant-specificity: 90%)
GP121380 (10) ,
(plant-specificity: 97%)
GP121383 (9) ,
(plant-specificity: 100%)
GP121569 (11) ,
(plant-specificity: 100%)
GP121570 (10) ,
(plant-specificity: 100%)
GP121984 (10) ,
(plant-specificity: 100%)
GP122038 (10) ,
(plant-specificity: 100%)
GP122041 (10) ,
(plant-specificity: 100%)
GP122463 (8) ,
(plant-specificity: 100%)
GP122526 (7) ,
(plant-specificity: 100%)
GP122594 (8) ,
(plant-specificity: 100%)
GP122603 (8) ,
(plant-specificity: 100%)
GP123293 (7) ,
(plant-specificity: 100%)
GP123294 (7) ,
(plant-specificity: 100%)
GP123295 (8) ,
(plant-specificity: 100%)
GP123298 (7) ,
(plant-specificity: 100%)
GP123302 (6) ,
(plant-specificity: 100%)
GP055750 (6) ,
(plant-specificity: 100%)
GP123787 (6) ,
(plant-specificity: 100%)
GP124207 (6) ,
(plant-specificity: 100%)
GP124214 (6) ,
(plant-specificity: 100%)
GP124216 (6) ,
(plant-specificity: 100%)
GP124219 (5) , GP054224 (5) , GP050995 (5) ,
(plant-specificity: 100%)
GP125339 (6) ,
(plant-specificity: 100%)
GP125524 (6) ,
(plant-specificity: 100%)
GP125525 (5) ,
(plant-specificity: 100%)
GP125528 (5) ,
(plant-specificity: 100%)
GP125533 (5) , GP125534 (4) ,
(plant-specificity: 100%)
GP125535 (5) ,
(plant-specificity: 100%)
GP125536 (5) ,
(plant-specificity: 100%)
GP125552 (5) ,
(plant-specificity: 100%)
GP051336 (7) , GP054797 (4) , GP058885 (4) , GP127341 (1) , GP127344 (4) ,
(plant-specificity: 100%)
GP127677 (5) , GP127678 (2) ,
(plant-specificity: 100%)
GP127679 (5) , GP127682 (4) , GP127684 (4) , GP061160 (3) , GP058917 (3) , GP131069 (3) , GP131921 (4) , GP131935 (3) , GP131937 (3) , GP131938 (3) , GP131944 (3) , GP131951 (3) ,
(plant-specificity: 100%)
GP131953 (5) , GP131959 (3)
4 GP071969 (87) ,
(plant-specificity: 100%)
GP132712 (34) ,
(plant-specificity: 100%)
GP132857 (27) ,
(plant-specificity: 100%)
GP133287 (19) ,
(plant-specificity: 100%)
GP087751 (18) ,
(plant-specificity: 100%)
GP133868 (15) ,
(plant-specificity: 100%)
GP134410 (12) ,
(plant-specificity: 28%)
GP134661 (11) ,
(plant-specificity: 100%)
GP134861 (11) ,
(plant-specificity: 100%)
GP134911 (11) ,
(plant-specificity: 90%)
GP135071 (10) ,
(plant-specificity: 100%)
GP135303 (10) ,
(plant-specificity: 100%)
GP135305 (10) ,
(plant-specificity: 100%)
GP135308 (10) ,
(plant-specificity: 100%)
GP135899 (9) ,
(plant-specificity: 100%)
GP136483 (8) ,
(plant-specificity: 100%)
GP136612 (8) ,
(plant-specificity: 100%)
GP136614 (8) ,
(plant-specificity: 100%)
GP136621 (8) ,
(plant-specificity: 100%)
GP082092 (7) ,
(plant-specificity: 100%)
GP137572 (7) ,
(plant-specificity: 96%)
GP138007 (6) ,
(plant-specificity: 100%)
GP138296 (6) ,
(plant-specificity: 100%)
GP138675 (6) ,
(plant-specificity: 100%)
GP138678 (6) ,
(plant-specificity: 100%)
GP138805 (6) ,
(plant-specificity: 100%)
GP138815 (6) ,
(plant-specificity: 100%)
GP138816 (6) ,
(plant-specificity: 100%)
GP138820 (6) ,
(plant-specificity: 100%)
GP138824 (6) ,
(plant-specificity: 100%)
GP138829 (6) ,
(plant-specificity: 100%)
GP138833 (6) , GP138967 (5) , GP081611 (5) ,
(plant-specificity: 100%)
GP140388 (5) ,
(plant-specificity: 100%)
GP140389 (5) ,
(plant-specificity: 100%)
GP140605 (5) ,
(plant-specificity: 100%)
GP140606 (5) ,
(plant-specificity: 100%)
GP140607 (5) ,
(plant-specificity: 100%)
GP140609 (5) ,
(plant-specificity: 100%)
GP140613 (5) ,
(plant-specificity: 100%)
GP140614 (5) ,
(plant-specificity: 100%)
GP140615 (5) ,
(plant-specificity: 100%)
GP140618 (5) ,
(plant-specificity: 100%)
GP140625 (5) ,
(plant-specificity: 100%)
GP140628 (5) ,
(plant-specificity: 100%)
GP140641 (5) , GP086547 (4) , GP091648 (4) , GP143138 (4) , GP143142 (4) , GP143527 (4) , GP143531 (4) , GP143533 (4) , GP143546 (4) , GP143556 (4) , GP143557 (4) , GP143563 (4) , GP144442 (3) , GP094667 (3) , GP091682 (3) , GP087655 (3) , GP149259 (3) , GP149261 (3) , GP149265 (3) , GP149266 (3) , GP149267 (3) , GP149269 (3) , GP149272 (3) , GP149273 (3) , GP149280 (3) , GP149282 (3) , GP149283 (3) , GP149287 (3) , GP149290 (3) , GP149292 (3) , GP149293 (3) , GP149294 (3) , GP149304 (3) , GP149317 (3) , GP149321 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 788
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
1 1
1 1
1 1
4 4
2 2
1 1
30 31
14 18
6 6
641 641
8 22
5 5
2 2
2 2
1 1
2 4
1 1
2 2
3 11
3 3
4 7
2 2
2 2
1 1
6 6
1 1
2 2
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Cytochrome b-c1 complex, subunit 6
IPR003422
Cytochrome b-c1 complex, subunit 6 Family 8 (62) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
788 756 (96%) 410 (52%) [42; 243; 1580] ~259 4806 16