Family GP000203


Family ID GP000203  add to my list RDF
Family name Muts/msh superfamily   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
mismatched DNA binding
GO:0030983 (21%) - mismatched DNA binding
cellular_component
MutSalpha complex
GO:0032301 (4%) - MutSalpha complex
MutSbeta complex
GO:0032302 (4%) - MutSbeta complex
biological_process
negative regulation of DNA recombination
GO:0045910 (8%) - negative regulation of DNA recombination
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Muts/msh superfamily
GP000203 (851)
2 GP017263 (288) ,
Dna mismatch repair protein muts2 family
GP017371 (206) , GP108977 (129) ,
(plant-specificity: 9%)
GP021409 (80) ,
(plant-specificity: 9%)
GP019100 (78) ,
Dna mismatch repair protein msh6 family (plant-specificity: 11%)
GP019987 (64) ,
(plant-specificity: 88%)
GP110136 (18) ,
(plant-specificity: 100%)
GP113191 (5)
3 GP044497 (144) , GP043772 (133) , GP118790 (129) ,
(plant-specificity: 9%)
GP046484 (80) , GP118893 (77) , GP044232 (78) , GP043928 (78) , GP044741 (64) , GP044371 (62) ,
(plant-specificity: 100%)
GP122141 (8) ,
(plant-specificity: 100%)
GP124520 (5)
4 GP071939 (129) , GP073585 (84) , GP076198 (80) , GP074059 (79) , GP073439 (78) , GP073440 (78) , GP075461 (77) , GP075789 (65) , GP074333 (63) , GP073935 (60) ,
(plant-specificity: 44%)
GP076920 (49) ,
(plant-specificity: 100%)
GP139329 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 851
Species Count (w/o splice) Count (w/ splice)
8 8
10 10
84 84
18 21
20 20
45 45
19 19
28 28
18 18
16 16
18 18
12 16
13 17
18 18
16 16
17 28
15 15
14 14
12 12
18 18
19 19
12 14
22 22
33 33
21 51
14 14
25 45
16 16
18 18
12 17
34 34
24 24
17 17
17 17
12 16
25 40
13 13


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
DNA mismatch repair protein MutS, type 2
IPR005747
DNA mismatch repair protein MutS, type 2 Family 8 (70) Yes
DNA mismatch repair protein, MSH2
IPR011184
DNA mismatch repair protein, MSH2 Family 4 (35) Yes
DNA mismatch repair protein Msh6
IPR017261
DNA mismatch repair protein Msh6 Family 3 (24) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DNA mismatch repair protein MutS, C-terminal
IPR000432
DNA mismatch repair protein MutS, C-terminal Domain 52 (443) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000432


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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
851 753 (88%) 455 (53%) [40; 491; 1860] ~574 5059 57