Family GP000784


Family ID GP000784  add to my list RDF
Family name NifU family   suggest a name
Synonym(s) Iron-sulphur (FeS)
Cross-reference(s) PMID:
The Arabidopsis chloroplastic NifU-like protein CnfU, which can act as an iron-sulfur cluster scaffold protein, is required for biogenesis of ferredoxin and photosystem I.
15031412 PMID:
Structural analysis of Arabidopsis CnfU protein: an iron-sulfur cluster biosynthetic scaffold in chloroplasts.
18585737
Comment
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
NifU family (plant-specificity: 9%)
GP000784 (760)
2 GP016301 (177) , GP017180 (125) , GP017537 (121) , GP018357 (105) , GP018430 (83) ,
HIRA-interacting protein 5 subfamily
GP020818 (68) ,
(plant-specificity: 100%)
GP023394 (30) ,
(plant-specificity: 100%)
GP024228 (20) ,
(plant-specificity: 100%)
GP027976 (9) ,
(plant-specificity: 100%)
GP025924 (8) ,
(plant-specificity: 19%)
GP113311 (5) , GP114107 (4) ,
(plant-specificity: 100%)
GP114260 (5) , GP117216 (3)
3 GP041090 (175) , GP042297 (112) , GP043070 (105) , GP043142 (83) , GP045852 (68) , GP044236 (67) ,
(plant-specificity: 76%)
GP045160 (58) ,
(plant-specificity: 100%)
GP048804 (27) ,
(plant-specificity: 100%)
GP052941 (20) ,
(plant-specificity: 100%)
GP121449 (9) ,
(plant-specificity: 100%)
GP054822 (9) ,
(plant-specificity: 100%)
GP052143 (8) ,
(plant-specificity: 19%)
GP124708 (5) , GP125784 (4) , GP126047 (4) , GP128720 (3) , GP130345 (3)
4 GP071024 (123) , GP071731 (111) , GP072566 (105) , GP072646 (83) , GP075493 (68) , GP074139 (67) , GP074565 (58) , GP074392 (52) ,
(plant-specificity: 100%)
GP078927 (25) ,
(plant-specificity: 100%)
GP084153 (14) ,
(plant-specificity: 100%)
GP086571 (9) ,
(plant-specificity: 100%)
GP135653 (9) ,
(plant-specificity: 100%)
GP083127 (8) ,
(plant-specificity: 100%)
GP084397 (6) ,
(plant-specificity: 19%)
GP139640 (5) , GP140938 (4) , GP141392 (4) , GP145176 (3) , GP147374 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 760
Species Count (w/o splice) Count (w/ splice)
7 7
11 11
40 40
13 14
13 13
26 26
12 12
21 21
19 19
17 17
15 15
15 23
15 22
16 16
17 17
22 39
16 16
13 13
22 22
16 16
23 23
14 20
16 16
29 29
15 42
12 12
23 58
14 14
21 21
12 16
29 29
14 14
18 19
14 14
11 13
21 30
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
HIRA-interacting protein 5
IPR017065
HIRA-interacting protein 5 Family 7 (52) Yes
Transferase 1, rSAM/selenodomain-associated
IPR018641
Transferase 1, rSAM/selenodomain-associated Family 1 (4) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
760 641 (84%) 328 (43%) [47; 239; 3323] ~492 7184 2