Family GP001396


Family ID GP001396  add to my list RDF
Family name Phosphoglycerate mutase superfamily   suggest a name
Cross-reference(s) PMID:
The histidine phosphatase superfamily: structure and function.
18092946
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phosphoglycerate mutase superfamily (plant-specificity: 40%)
GP001396 (759)
2
Ole e 1 allergen family
GP016417 (204) ,
Phosphoglycerate mutase 1 family
GP017712 (125) ,
Phosphoglycerate mutase family 2
GP018251 (95) ,
Phosphoglycerate mutase family 1
GP018250 (89) ,
(plant-specificity: 99%)
GP019912 (76) ,
(plant-specificity: 100%)
GP019383 (70) ,
(plant-specificity: 99%)
GP022096 (47) ,
(plant-specificity: 30%)
GP022386 (38) ,
(plant-specificity: 100%)
GP026591 (6) , GP114461 (4) , GP114530 (3)
3 GP041036 (204) , GP042391 (125) , GP042955 (94) , GP042954 (89) , GP044250 (70) , GP044840 (67) ,
(plant-specificity: 99%)
GP047256 (47) ,
(plant-specificity: 30%)
GP047605 (38) ,
(plant-specificity: 98%)
GP121736 (9) ,
(plant-specificity: 100%)
GP053023 (6) , GP126357 (4) , GP129655 (3)
4 GP070438 (196) , GP071894 (125) , GP072532 (89) , GP073792 (70) , GP074453 (67) ,
(plant-specificity: 25%)
GP077122 (49) ,
(plant-specificity: 99%)
GP077089 (47) , GP076609 (45) ,
(plant-specificity: 30%)
GP077476 (38) ,
(plant-specificity: 98%)
GP135515 (9) ,
(plant-specificity: 100%)
GP081967 (8) ,
(plant-specificity: 100%)
GP084283 (6) , GP146585 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 759
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
6 6
11 17
11 11
37 37
9 9
25 25
16 16
13 13
10 10
19 21
14 19
12 12
25 25
17 24
17 17
14 14
20 20
16 16
13 13
18 21
16 16
26 26
24 52
15 15
24 34
15 15
20 20
16 21
45 45
22 22
28 30
13 13
22 32
38 50
18 18


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Phosphoglycerate mutase 1
IPR005952
Phosphoglycerate mutase 1 Family 10 (77) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
759 669 (88%) 369 (49%) [40; 232; 1065] ~252 3982 57