Family GP000406


Family ID GP000406  add to my list RDF
Family name Frigida-like family   suggest a name
Family Ontology
Close Hide
N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Frigida-like family (plant-specificity: 94%)
GP000406 (783)
2 GP015811 (556) ,
(plant-specificity: 100%)
GP019854 (99) ,
(plant-specificity: 97%)
GP020829 (51) ,
(plant-specificity: 30%)
GP022199 (49) ,
(plant-specificity: 84%)
GP109760 (23) ,
(plant-specificity: 100%)
GP036875 (8) ,
(plant-specificity: 100%)
GP112109 (7) ,
(plant-specificity: 100%)
GP025725 (8) , GP116439 (3)
3 GP041176 (519) , GP044779 (99) ,
(plant-specificity: 97%)
GP045862 (51) ,
(plant-specificity: 30%)
GP047368 (48) ,
(plant-specificity: 60%)
GP119503 (21) ,
(plant-specificity: 70%)
GP119725 (21) ,
(plant-specificity: 100%)
GP050163 (11) , GP121002 (3) ,
(plant-specificity: 100%)
GP052818 (8) ,
(plant-specificity: 100%)
GP065884 (8) ,
(plant-specificity: 100%)
GP122922 (7) , GP129271 (3)
4 GP070765 (327) , GP074385 (99) , GP073460 (80) ,
(plant-specificity: 97%)
GP075501 (51) ,
(plant-specificity: 30%)
GP077412 (47) ,
(plant-specificity: 30%)
GP088785 (46) ,
(plant-specificity: 100%)
GP078513 (35) ,
(plant-specificity: 70%)
GP133102 (21) ,
(plant-specificity: 66%)
GP133991 (14) ,
(plant-specificity: 100%)
GP080587 (11) ,
(plant-specificity: 76%)
GP135585 (9) ,
(plant-specificity: 100%)
GP083887 (8) ,
(plant-specificity: 100%)
GP100276 (8) ,
(plant-specificity: 100%)
GP081939 (7) ,
(plant-specificity: 100%)
GP137127 (7) ,
(plant-specificity: 100%)
GP082708 (5) ,
(plant-specificity: 88%)
GP099165 (5) , GP144096 (3) , GP145476 (3) , GP145876 (3) , GP146017 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 783
Species Count (w/o splice) Count (w/ splice)
5 5
4 4
9 10
7 7
59 59
14 14
19 19
16 16
19 19
17 17
16 20
12 13
13 13
15 15
17 32
13 13
8 8
15 15
16 16
13 13
14 14
12 12
51 51
18 42
10 10
22 69
18 18
23 23
6 10
46 46
22 22
63 63
17 17
11 13
23 33
12 12


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Frigida-like
IPR012474
Frigida-like Family 63 (490) No
Meiosis specific protein SPO22
IPR013940
Meiosis specific protein SPO22 Family 4 (32) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012474


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
783 674 (86%) 407 (52%) [55; 531; 2512] ~530 8541 143